NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Platform GPL3802 Query DataSets for GPL3802
Status Public on May 26, 2006
Title [wheat] Affymetrix Wheat Genome Array
Technology type in situ oligonucleotide
Distribution commercial
Organism Triticum aestivum
Manufacturer Affymetrix
Manufacture protocol see manufacturer's web site
 
Description Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/projects/geo/info/geo_affy.html

This array contains 61,127 probe sets representing 55,052 transcripts for all 42 chromosomes in the wheat genome. Sequence information for the GeneChip Wheat Genome Array includes public content from Triticum aestivum UniGene Build #38 (build date April 24, 2004). Also included are ESTs from the wheat species T. monococcum, T. turgidum, and Aegilops tauschii, and GenBank full-length mRNAs from all species through May 18, 2004.
 
Web link http://www.affymetrix.com/support/technical/byproduct.affx?product=wheat
http://www.affymetrix.com/analysis/index.affx
Submission date May 24, 2006
Last update date Dec 04, 2018
Organization Affymetrix, Inc.
E-mail(s) geo@ncbi.nlm.nih.gov, support@affymetrix.com
Phone 888-362-2447
URL http://www.affymetrix.com/index.affx
Street address
City Santa Clara
State/province CA
ZIP/Postal code 95051
Country USA
 
Samples (2195) GSM111144, GSM111145, GSM111146, GSM111147, GSM111174, GSM111175 
Series (95)
GSE4929 wheat expression level polymorphism study parental genotypes 2 biological reps
GSE4935 wheat expression level polymorphism study 39 genotypes 2 biological reps
GSE5937 Wheat expression level polymorphism study parental genotypes 2 biological reps from SB location

Data table header descriptions
ID
Species Scientific Name
Annotation Date Date when sequences were annotated
Sequence Type
Sequence Source
Target Description
GB_ACC Representative public sequence for the sequence that probe sets were designed against
SPOT_ID
Gene Title
Annotation Transcript Cluster

Data table
ID Species Scientific Name Annotation Date Sequence Type Sequence Source Target Description GB_ACC SPOT_ID Gene Title Annotation Transcript Cluster
AFFX-BioB-3_at Triticum aestivum 11-Apr-06 Consensus sequence Affymetrix Proprietary Database E. coli /GEN=bioB /DB_XREF=gb:J04423.1 /NOTE=SIF corresponding to nucleotides 2755-3052 of gb:J04423.1 /DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds. -- AFFX-BioB-3 --- J04423
AFFX-BioB-5_at Triticum aestivum 11-Apr-06 Consensus sequence Affymetrix Proprietary Database E. coli /GEN=bioB /DB_XREF=gb:J04423.1 /NOTE=SIF corresponding to nucleotides 2032-2305 of gb:J04423.1 /DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds. -- AFFX-BioB-5 --- J04423
AFFX-BioB-M_at Triticum aestivum 11-Apr-06 Consensus sequence Affymetrix Proprietary Database E. coli /GEN=bioB /DB_XREF=gb:J04423.1 /NOTE=SIF corresponding to nucleotides 2482-2739 of gb:J04423.1 /DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds. -- AFFX-BioB-M --- J04423
AFFX-BioC-3_at Triticum aestivum 11-Apr-06 Consensus sequence Affymetrix Proprietary Database E. coli /GEN=bioC /DB_XREF=gb:J04423.1 /NOTE=SIF corresponding to nucleotides 4626-4878 of gb:J04423.1 /DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds. -- AFFX-BioC-3 --- J04423
AFFX-BioC-5_at Triticum aestivum 11-Apr-06 Consensus sequence Affymetrix Proprietary Database E. coli /GEN=bioC /DB_XREF=gb:J04423.1 /NOTE=SIF corresponding to nucleotides 4218-4566 of gb:J04423.1 /DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds. -- AFFX-BioC-5 --- J04423
AFFX-BioDn-3_at Triticum aestivum 11-Apr-06 Consensus sequence Affymetrix Proprietary Database E. coli /GEN=bioD /DB_XREF=gb:J04423.1 /NOTE=SIF corresponding to nucleotides 5286-5570 of gb:J04423.1, not 100% identical /DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds. -- AFFX-BioDn-3 --- J04423
AFFX-BioDn-5_at Triticum aestivum 11-Apr-06 Consensus sequence Affymetrix Proprietary Database E. coli /GEN=bioD /DB_XREF=gb:J04423.1 /NOTE=SIF corresponding to nucleotides 4980-5256 of gb:J04423.1, not 100% identical /DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds. -- AFFX-BioDn-5 --- J04423
AFFX-CreX-3_at Triticum aestivum 11-Apr-06 Consensus sequence Affymetrix Proprietary Database Bacteriophage P1 /GEN=cre /DB_XREF=gb:X03453.1 /NOTE=SIF corresponding to nucleotides 1089-1495 of gb:X03453.1 /DEF=Bacteriophage P1 cre gene for recombinase protein. -- AFFX-CreX-3 --- X03453
AFFX-CreX-5_at Triticum aestivum 11-Apr-06 Consensus sequence Affymetrix Proprietary Database Bacteriophage P1 /GEN=cre /DB_XREF=gb:X03453.1 /NOTE=SIF corresponding to nucleotides 513-1047 of gb:X03453.1 /DEF=Bacteriophage P1 cre gene for recombinase protein. -- AFFX-CreX-5 --- X03453
AFFX-DapX-3_at Triticum aestivum 11-Apr-06 Consensus sequence Affymetrix Proprietary Database B. subtilis /GEN=jojG /DB_XREF=gb:L38424.1 /NOTE=SIF corresponding to nucleotides 2684-3130 of gb:L38424.1 /DEF=Bacillus subtilis dihydropicolinate reductase (jojE) gene, complete cds; poly(A) polymerase (jojI) gene, complete cds; biotin acetyl-CoA-carboxylase ligase (birA) gene, complete cds; jojC, jojD, jojF, jojG, jojH genes, complete cds's. -- AFFX-DapX-3 --- L38424
AFFX-DapX-5_at Triticum aestivum 11-Apr-06 Consensus sequence Affymetrix Proprietary Database B. subtilis /GEN=dapB /DB_XREF=gb:L38424.1 /NOTE=SIF corresponding to nucleotides 1428-1926 of gb:L38424.1 /DEF=Bacillus subtilis dihydropicolinate reductase (jojE) gene, complete cds; poly(A) polymerase (jojI) gene, complete cds; biotin acetyl-CoA-carboxylase ligase (birA) gene, complete cds; jojC, jojD, jojF, jojG, jojH genes, complete cds's. -- AFFX-DapX-5 --- L38424
AFFX-DapX-M_at Triticum aestivum 11-Apr-06 Consensus sequence Affymetrix Proprietary Database B. subtilis /GEN=dapB, jojF /DB_XREF=gb:L38424.1 /NOTE=SIF corresponding to nucleotides 2020-2580 of gb:L38424.1, not 100% identical /DEF=Bacillus subtilis dihydropicolinate reductase (jojE) gene, complete cds; poly(A) polymerase (jojI) gene, complete cds; biotin acetyl-CoA-carboxylase ligase (birA) gene, complete cds; jojC, jojD, jojF, jojG, jojH genes, complete cds's. -- AFFX-DapX-M --- AFFX-DapX-M
AFFX-LysX-3_at Triticum aestivum 11-Apr-06 Consensus sequence Affymetrix Proprietary Database B. subtilis /GEN=lys /DB_XREF=gb:X17013.1 /NOTE=SIF corresponding to nucleotides 1061-1343 of gb:X17013.1, not 100% identical /DEF=B subtilis lys gene for diaminopimelate decarboxylase (EC 4.1.1.20). -- AFFX-LysX-3 --- X17013
AFFX-LysX-5_at Triticum aestivum 11-Apr-06 Consensus sequence Affymetrix Proprietary Database B. subtilis /GEN=lys /DB_XREF=gb:X17013.1 /NOTE=SIF corresponding to nucleotides 387-658 of gb:X17013.1, not 100% identical /DEF=B subtilis lys gene for diaminopimelate decarboxylase (EC 4.1.1.20). -- AFFX-LysX-5 --- X17013
AFFX-LysX-M_at Triticum aestivum 11-Apr-06 Consensus sequence Affymetrix Proprietary Database B. subtilis /GEN=lys /DB_XREF=gb:X17013.1 /NOTE=SIF corresponding to nucleotides 720-990 of gb:X17013.1, not 100% identical /DEF=B subtilis lys gene for diaminopimelate decarboxylase (EC 4.1.1.20). -- AFFX-LysX-M --- AFFX-LysX-M
AFFX-PheX-3_at Triticum aestivum 11-Apr-06 Consensus sequence Affymetrix Proprietary Database B. subtilis /GEN=pheB /DB_XREF=gb:M24537.1 /NOTE=SIF corresponding to nucleotides 2885-3326 of gb:M24537.1, not 100% identical /DEF=Bacillus subtillis sporulation protein (spoOB), GTP-binding protein (obg), phenylalanine biosynthesis associated protein (pheB), and monofunctional prephenate dehydratase (pheA) genes, complete cds. -- AFFX-PheX-3 --- AFFX-PheX-3
AFFX-PheX-5_at Triticum aestivum 11-Apr-06 Consensus sequence Affymetrix Proprietary Database B. subtilis /GEN=pheA /DB_XREF=gb:M24537.1 /NOTE=SIF corresponding to nucleotides 2028-2375 of gb:M24537.1, not 100% identical /DEF=Bacillus subtillis sporulation protein (spoOB), GTP-binding protein (obg), phenylalanine biosynthesis associated protein (pheB), and monofunctional prephenate dehydratase (pheA) genes, complete cds. -- AFFX-PheX-5 --- M24537
AFFX-PheX-M_at Triticum aestivum 11-Apr-06 Consensus sequence Affymetrix Proprietary Database B. subtilis /GEN=pheA /DB_XREF=gb:M24537.1 /NOTE=SIF corresponding to nucleotides 2437-2828 of gb:M24537.1 /DEF=Bacillus subtillis sporulation protein (spoOB), GTP-binding protein (obg), phenylalanine biosynthesis associated protein (pheB), and monofunctional prephenate dehydratase (pheA) genes, complete cds. -- AFFX-PheX-M --- AFFX-PheX-M
AFFX-r2-Bs-dap-3_at Triticum aestivum 11-Apr-06 Consensus sequence Affymetrix Proprietary Database B. subtilis /GEN=jojG /DB_XREF=gb:L38424.1 /NOTE=SIF corresponding to nucleotides 2634-3089 of gb:L38424.1 /DEF=Bacillus subtilis dihydropicolinate reductase (jojE) gene, complete cds; poly(A) polymerase (jojI) gene, complete cds; biotin acetyl-CoA-carboxylase ligase (birA) gene, complete cds; jojC, jojD, jojF, jojG, jojH genes, complete cds's. -- AFFX-r2-Bs-dap-3 --- AFFX-r2-Bs-dap-3
AFFX-r2-Bs-dap-5_at Triticum aestivum 11-Apr-06 Consensus sequence Affymetrix Proprietary Database B. subtilis /GEN=dapB /DB_XREF=gb:L38424.1 /NOTE=SIF corresponding to nucleotides 1439-1846 of gb:L38424.1 /DEF=Bacillus subtilis dihydropicolinate reductase (jojE) gene, complete cds; poly(A) polymerase (jojI) gene, complete cds; biotin acetyl-CoA-carboxylase ligase (birA) gene, complete cds; jojC, jojD, jojF, jojG, jojH genes, complete cds's. -- AFFX-r2-Bs-dap-5 --- AFFX-r2-Bs-dap-5

Total number of rows: 61290

Table truncated, full table size 23711 Kbytes.






Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary data files not provided

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap