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Status
Public on Dec 15, 2011
Title
INRA 4-plex Laccaria bicolor whole genome expression array
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Laccaria bicolor S238N-H82 Manufacturer
Roche-NimbleGen
Manufacture protocol
Propriety in situ oligonucleotide synthesis
Support
unknown
Coating
unknown
Description
This is a condensed platform of the full array which has probes designed from gene models taken from the Joint Genome Institute Laccaria bicolor genome sequence version 1.0
Contributor(s)
Kohler A , Tisserant E , Hilselberger B , Martin F Submission date
Sep 30, 2011
Last update date
Dec 15, 2011
Contact name
Annegret Kohler
E-mail(s)
annegret.kohler@inrae.fr Phone
+33 (0)383 394072
Organization name
INRAE
Department
UMR 1136
Lab
Interactions Arbres/Micro-organismes
Street address
Centre INRAE Grand Est Nancy
City
Champenoux
ZIP/Postal code
54280
Country
France
Samples (52)
GSM805234 , GSM805235 , GSM805263 , GSM806997 , GSM806998 , GSM806999
GSM807000 ,
GSM807001 ,
GSM807002 ,
GSM807003 ,
GSM807040 ,
GSM807041 ,
GSM870436 ,
GSM870437 ,
GSM870438 ,
GSM870439 ,
GSM870440 ,
GSM870441 ,
GSM870442 ,
GSM870443 ,
GSM870444 ,
GSM870445 ,
GSM870446 ,
GSM870447 ,
GSM870448 ,
GSM870449 ,
GSM870450 ,
GSM1523143 ,
GSM1523144 ,
GSM1523145 ,
GSM1523146 ,
GSM1523147 ,
GSM1523148 ,
GSM1523149 ,
GSM1523150 ,
GSM1523151 ,
GSM1523152 ,
GSM1523153 ,
GSM1523154 ,
GSM1523155 ,
GSM1523156 ,
GSM1523157 ,
GSM1523158 ,
GSM1523159 ,
GSM1523160 ,
GSM1523161 ,
GSM1523162 ,
GSM1523163 ,
GSM1523164 ,
GSM1523165 ,
GSM1523166 ,
GSM1523167 Series (4)
GSE32559 Laccaria bicolor gene expression in different tissues and with different host trees
GSE35556 Gene expression of Laccaria bicolor S238N free-living mycelium grown on different media
GSE62225 Laccaria-Poplar: A Timecourse of Mycorrhizal Root Tip Development
GSE62226 Laccaria-Douglas fir: A Timecourse of Mycorrhizal Root Tip Development
Data table header descriptions ID SEQ_ID Accession assigned by NimblGen to gene
Block Probe replicates
SPOT_ID Protein ID from the Joint Genome Institute annotation version 1.0
Best Hit BlastX NCBI Highest scoring BlastX return using NCBI nr database
NCBI Accession Number Accession number of highest scoring Blast return
NCBI Score Score of highest scoring Blast return
NCBI E value E value of highest scoring Blast return
Data table ID SEQ_ID Block SPOT_ID Best Hit BlastX NCBI NCBI Accession Number NCBI Score NCBI E value 1
40600
Block1
40600
2
122853
Block1
122853
cytosolic ribosomal protein (Rps29a), [Aspergillusfumigatus Af293]
gb|EAL89112.1|
102
4,00E-21
3
122879
Block1
122879
SPBC1685.10 [Schizosaccharomyces pombe]
emb|CAA20058.1|
147
7,00E-35
4
123000
Block1
123000
mitochondrial ribosome small subunit component RPS19 [Pleurotusdjamor]
gb|AAS46754.1|
167
7,00E-41
5
123064
Block1
123064
mitochondrial ribosome small subunit component RPS19 [Pleurotusdjamor]
gb|AAS46754.1|
170
1,00E-41
6
123195
Block1
123195
proteasome regulatory particle subunit (RpnI), putative[Aspergillus fumigatus Af293]
gb|EAL89117.1|
300
4,00E-80
7
123238
Block1
123238
heat-induced catalase [Pleurotus sajor-caju]
gb|AAK15159.1|
864
0
8
140780
Block1
140780
SH3 and Ded_cyto domain protein, [Aspergillus fumigatusAf293]
gb|EAL88144.1|
657
0
9
140840
Block1
140840
C2 domain protein [Aspergillus fumigatus Af293]
gb|EAL84659.1|
599
e-169
10
140898
Block1
140898
phospholipid-translocating ATPase, [Cryptococcus neoformansvar. neoformans JEC21]
gb|AAW47148.1|
1232
0
11
140911
Block1
140911
DNA polymerase alpha catalytic subunit [Coprinopsis cinerea]
dbj|BAC76767.1|
1577
0
12
140913
Block1
140913
hypothetical protein UM04085.1 [Ustilago maydis 521]
ref|XP_760232.1|
1508
0
13
140954
Block1
140954
alpha-glucosidase precursor, [Cryptococcus neoformans var.neoformans JEC21]
gb|AAW45012.1|
789
0
14
141037
Block1
141037
SSK22 like MAPKK kinase, [Cryptococcus neoformans var.neoformans JEC21]
gb|AAW46575.1|
940
0
15
141130
Block1
141130
3'-5' exoribonuclease, [Cryptococcus neoformans var.neoformans JEC21]
gb|AAW42442.1|
1044
0
16
141174
Block1
141174
cytoplasm protein, [Cryptococcus neoformans var. neoformansJEC21]
gb|AAW41390.1|
674
0
17
141258
Block1
141258
oxoglutarate dehydrogenase (succinyl-transferring), putative[Cryptococcus neoformans var. neoformans JEC21]
gb|AAW41534.1|
1324
0
18
141442
Block1
141442
hypothetical protein CNBK1800 [Cryptococcus neoformans var.neoformans B-3501A]
gb|EAL18160.1|
793
0
19
141500
Block1
141500
unnamed protein product [Phanerochaete chrysosporium]
emb|CAA83245.1|
740
0
20
141514
Block1
141514
DNA replication licensing factor cdc19 (cell division controlprotein 19), [Cryptococcus neoformans var.neoformans JEC21]
gb|AAW44656.1|
1104
0
18652 1388 Kbytes .Supplementary file Size Download File type/resource GPL14641_080528_L_bicolor_INRA_AK_expr.ndf.gz
4.2 Mb
(ftp) (http) NDF
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