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Status |
Public on Dec 15, 2011 |
Title |
Laccaria bicolor gene expression in different tissues and with different host trees |
Platform organism |
Laccaria bicolor S238N-H82 |
Sample organisms |
Pseudotsuga menziesii; Populus trichocarpa; Populus deltoides; Laccaria bicolor S238N-H82 |
Experiment type |
Expression profiling by array
|
Summary |
Laccaria bicolor transcript profiles of different tissues and mycorrhizal root tips from different host trees were analyzed. The array probes were designed from gene models taken from the Joint Genome Institute (JGI, department of energy) Laccaria bicolor genome sequence version 1. One goal was to compare gene expression profiles from ectomycorrhizal root tips with different host plants.
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Overall design |
We performed 12 hybridizations (Roche-NimbleGen) with samples derived from Laccaria bicolor free-living mycelium and from Populus trichocarpa, P. deltoides and douglas fir ECM.
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Contributor(s) |
Kohler A, Tisserant E, Lucic E, Brun A, Peter M, Martin F |
Citation(s) |
24074284 |
Submission date |
Oct 03, 2011 |
Last update date |
Aug 22, 2019 |
Contact name |
Annegret Kohler |
E-mail(s) |
annegret.kohler@inrae.fr
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Phone |
+33 (0)383 394072
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Organization name |
INRAE
|
Department |
UMR 1136
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Lab |
Interactions Arbres/Micro-organismes
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Street address |
Centre INRAE Grand Est Nancy
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City |
Champenoux |
ZIP/Postal code |
54280 |
Country |
France |
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Platforms (1) |
GPL14641 |
INRA 4-plex Laccaria bicolor whole genome expression array |
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Samples (12)
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GSM805234 |
Free-living mycelium of Laccaria bicolor S238N-1 |
GSM805235 |
Free-living mycelium of Laccaria bicolor S238N-2 |
GSM805263 |
Free-living mycelium of Laccaria bicolor S238N-3 |
GSM806997 |
Laccaria/Pseudotsuga ECM greenhouse-1 |
GSM806998 |
Laccaria/Pseudotsuga ECM greenhouse-2 |
GSM806999 |
Laccaria/Pseudotsuga ECM greenhouse-3 |
GSM807000 |
Laccaria/Populus deltoides ECM greenhouse-1 |
GSM807001 |
Laccaria/Populus deltoides ECM greenhouse-2 |
GSM807002 |
Laccaria/Populus deltoides ECM greenhouse-3 |
GSM807003 |
Laccaria/Populus trichocarpa ECM greenhouse-1 |
GSM807040 |
Laccaria/Populus trichocarpa ECM greenhouse-2 |
GSM807041 |
Laccaria/Populus trichocarpa ECM greenhouse-3 |
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Relations |
BioProject |
PRJNA147111 |