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Series GSE32559 Query DataSets for GSE32559
Status Public on Dec 15, 2011
Title Laccaria bicolor gene expression in different tissues and with different host trees
Platform organism Laccaria bicolor S238N-H82
Sample organisms Pseudotsuga menziesii; Populus trichocarpa; Populus deltoides; Laccaria bicolor S238N-H82
Experiment type Expression profiling by array
Summary Laccaria bicolor transcript profiles of different tissues and mycorrhizal root tips from different host trees were analyzed. The array probes were designed from gene models taken from the Joint Genome Institute (JGI, department of energy) Laccaria bicolor genome sequence version 1. One goal was to compare gene expression profiles from ectomycorrhizal root tips with different host plants.
 
Overall design We performed 12 hybridizations (Roche-NimbleGen) with samples derived from Laccaria bicolor free-living mycelium and from Populus trichocarpa, P. deltoides and douglas fir ECM.
 
Contributor(s) Kohler A, Tisserant E, Lucic E, Brun A, Peter M, Martin F
Citation(s) 24074284
Submission date Oct 03, 2011
Last update date Aug 22, 2019
Contact name Annegret Kohler
E-mail(s) annegret.kohler@inrae.fr
Phone +33 (0)383 394072
Organization name INRAE
Department UMR 1136
Lab Interactions Arbres/Micro-organismes
Street address Centre INRAE Grand Est Nancy
City Champenoux
ZIP/Postal code 54280
Country France
 
Platforms (1)
GPL14641 INRA 4-plex Laccaria bicolor whole genome expression array
Samples (12)
GSM805234 Free-living mycelium of Laccaria bicolor S238N-1
GSM805235 Free-living mycelium of Laccaria bicolor S238N-2
GSM805263 Free-living mycelium of Laccaria bicolor S238N-3
Relations
BioProject PRJNA147111

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE32559_RAW.tar 17.3 Mb (http)(custom) TAR (of PAIR)
Processed data included within Sample table

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