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ATXN2 ataxin 2 [ Papio anubis (olive baboon) ]

Gene ID: 101001338, updated on 8-Mar-2024

Summary

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Gene symbol
ATXN2
Gene description
ataxin 2
See related
Ensembl:ENSPANG00000017168
Gene type
protein coding
RefSeq status
MODEL
Organism
Papio anubis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Papio
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 9
Exon count:
28
Annotation release Status Assembly Chr Location
104 current Panubis1.0 (GCF_008728515.1) 9 NC_044984.1 (105754424..105909952, complement)
103 previous assembly Panu_3.0 (GCF_000264685.3) 11 NC_018162.2 (111206989..111366505, complement)

Chromosome 9 - NC_044984.1Genomic Context describing neighboring genes Neighboring gene heat shock cognate 71 kDa protein pseudogene Neighboring gene PH domain containing endocytic trafficking adaptor 1 Neighboring gene SH2B adaptor protein 3 Neighboring gene U7 small nuclear RNA Neighboring gene interferon-induced transmembrane protein 3 pseudogene Neighboring gene 40S ribosomal protein S18-like Neighboring gene BRCA1 associated protein Neighboring gene acyl-CoA dehydrogenase family member 10

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in stress granule assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasmic stress granule IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ataxin-2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Papio anubis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Panubis1.0 Primary Assembly

Genomic

  1. NC_044984.1 Reference Panubis1.0 Primary Assembly

    Range
    105754424..105909952 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021922948.2 → XP_021778640.2  ataxin-2 isoform X18

    UniProtKB/TrEMBL
    A0A2I3N4C8
    Conserved Domains (5) summary
    COG5180
    Location:348 → 493
    PBP1; PAB1-binding protein PBP1, interacts with poly(A)-binding protein [RNA processing and modification]
    PRK12323
    Location:562 → 753
    PRK12323; DNA polymerase III subunit gamma/tau
    pfam06741
    Location:403 → 464
    LsmAD; LsmAD domain
    pfam09770
    Location:902 → 1178
    PAT1; Topoisomerase II-associated protein PAT1
    pfam14438
    Location:259 → 335
    SM-ATX; Ataxin 2 SM domain

  2. XM_021922950.2 → XP_021778642.2  ataxin-2 isoform X20

    Conserved Domains (5) summary
    PHA03247
    Location:787 → 1124
    PHA03247; large tegument protein UL36; Provisional
    COG5180
    Location:348 → 493
    PBP1; PAB1-binding protein PBP1, interacts with poly(A)-binding protein [RNA processing and modification]
    pfam07145
    Location:768 → 783
    PAM2; Ataxin-2 C-terminal region
    pfam06741
    Location:403 → 464
    LsmAD; LsmAD domain
    pfam14438
    Location:259 → 335
    SM-ATX; Ataxin 2 SM domain

  3. XM_021922947.2 → XP_021778639.2  ataxin-2 isoform X17

    UniProtKB/TrEMBL
    A0A096MU68
    Conserved Domains (4) summary
    COG5180
    Location:348 → 493
    PBP1; PAB1-binding protein PBP1, interacts with poly(A)-binding protein [RNA processing and modification]
    pfam06741
    Location:403 → 464
    LsmAD; LsmAD domain
    pfam09770
    Location:832 → 1108
    PAT1; Topoisomerase II-associated protein PAT1
    pfam14438
    Location:259 → 335
    SM-ATX; Ataxin 2 SM domain

  4. XM_021922945.2 → XP_021778637.2  ataxin-2 isoform X15

    UniProtKB/TrEMBL
    A0A096MU68
    Conserved Domains (4) summary
    COG5180
    Location:348 → 493
    PBP1; PAB1-binding protein PBP1, interacts with poly(A)-binding protein [RNA processing and modification]
    pfam06741
    Location:403 → 464
    LsmAD; LsmAD domain
    pfam09770
    Location:841 → 1117
    PAT1; Topoisomerase II-associated protein PAT1
    pfam14438
    Location:259 → 335
    SM-ATX; Ataxin 2 SM domain

  5. XM_021922946.2 → XP_021778638.2  ataxin-2 isoform X16

    UniProtKB/TrEMBL
    A0A096MU68
    Conserved Domains (4) summary
    COG5180
    Location:348 → 493
    PBP1; PAB1-binding protein PBP1, interacts with poly(A)-binding protein [RNA processing and modification]
    pfam06741
    Location:403 → 464
    LsmAD; LsmAD domain
    pfam09770
    Location:836 → 1112
    PAT1; Topoisomerase II-associated protein PAT1
    pfam14438
    Location:259 → 335
    SM-ATX; Ataxin 2 SM domain

  6. XM_021922943.2 → XP_021778635.2  ataxin-2 isoform X14

    UniProtKB/TrEMBL
    A0A2I3N4C8
    Related
    ENSPANP00000021053.2, ENSPANT00000055532.2
    Conserved Domains (6) summary
    COG5180
    Location:348 → 493
    PBP1; PAB1-binding protein PBP1, interacts with poly(A)-binding protein [RNA processing and modification]
    PRK12323
    Location:562 → 753
    PRK12323; DNA polymerase III subunit gamma/tau
    pfam07145
    Location:904 → 919
    PAM2; Ataxin-2 C-terminal region
    pfam06741
    Location:403 → 464
    LsmAD; LsmAD domain
    pfam09770
    Location:924 → 1112
    PAT1; Topoisomerase II-associated protein PAT1
    pfam14438
    Location:259 → 335
    SM-ATX; Ataxin 2 SM domain

  7. XM_021922939.2 → XP_021778631.2  ataxin-2 isoform X9

    UniProtKB/TrEMBL
    A0A096MU68
    Conserved Domains (7) summary
    COG5180
    Location:348 → 493
    PBP1; PAB1-binding protein PBP1, interacts with poly(A)-binding protein [RNA processing and modification]
    PRK12323
    Location:562 → 753
    PRK12323; DNA polymerase III subunit gamma/tau
    pfam07145
    Location:904 → 919
    PAM2; Ataxin-2 C-terminal region
    pfam03154
    Location:916 → 1295
    Atrophin-1; Atrophin-1 family
    pfam06741
    Location:403 → 464
    LsmAD; LsmAD domain
    pfam09770
    Location:924 → 1112
    PAT1; Topoisomerase II-associated protein PAT1
    pfam14438
    Location:259 → 335
    SM-ATX; Ataxin 2 SM domain

  8. XM_021922934.2 → XP_021778626.2  ataxin-2 isoform X4

    UniProtKB/TrEMBL
    A0A096MU68
    Related
    ENSPANP00000003365.3, ENSPANT00000011096.3
    Conserved Domains (6) summary
    PHA03247
    Location:923 → 1247
    PHA03247; large tegument protein UL36; Provisional
    COG5180
    Location:348 → 493
    PBP1; PAB1-binding protein PBP1, interacts with poly(A)-binding protein [RNA processing and modification]
    PRK12323
    Location:562 → 753
    PRK12323; DNA polymerase III subunit gamma/tau
    pfam07145
    Location:904 → 919
    PAM2; Ataxin-2 C-terminal region
    pfam06741
    Location:403 → 464
    LsmAD; LsmAD domain
    pfam14438
    Location:259 → 335
    SM-ATX; Ataxin 2 SM domain

  9. XM_021922936.2 → XP_021778628.2  ataxin-2 isoform X6

    UniProtKB/TrEMBL
    A0A096MU68
    Conserved Domains (5) summary
    COG5180
    Location:348 → 493
    PBP1; PAB1-binding protein PBP1, interacts with poly(A)-binding protein [RNA processing and modification]
    PRK12323
    Location:562 → 753
    PRK12323; DNA polymerase III subunit gamma/tau
    pfam06741
    Location:403 → 464
    LsmAD; LsmAD domain
    pfam09770
    Location:902 → 1158
    PAT1; Topoisomerase II-associated protein PAT1
    pfam14438
    Location:259 → 335
    SM-ATX; Ataxin 2 SM domain

  10. XM_021922932.2 → XP_021778624.2  ataxin-2 isoform X2

    UniProtKB/TrEMBL
    A0A096MU68
    Conserved Domains (5) summary
    COG5180
    Location:348 → 493
    PBP1; PAB1-binding protein PBP1, interacts with poly(A)-binding protein [RNA processing and modification]
    PRK12323
    Location:562 → 753
    PRK12323; DNA polymerase III subunit gamma/tau
    pfam06741
    Location:403 → 464
    LsmAD; LsmAD domain
    pfam09770
    Location:902 → 1176
    PAT1; Topoisomerase II-associated protein PAT1
    pfam14438
    Location:259 → 335
    SM-ATX; Ataxin 2 SM domain

  11. XM_021922938.2 → XP_021778630.2  ataxin-2 isoform X8

    UniProtKB/TrEMBL
    A0A096MU68
    Conserved Domains (6) summary
    PHA03247
    Location:923 → 1231
    PHA03247; large tegument protein UL36; Provisional
    COG5180
    Location:348 → 493
    PBP1; PAB1-binding protein PBP1, interacts with poly(A)-binding protein [RNA processing and modification]
    PRK12323
    Location:562 → 753
    PRK12323; DNA polymerase III subunit gamma/tau
    pfam07145
    Location:904 → 919
    PAM2; Ataxin-2 C-terminal region
    pfam06741
    Location:403 → 464
    LsmAD; LsmAD domain
    pfam14438
    Location:259 → 335
    SM-ATX; Ataxin 2 SM domain

  12. XM_021922933.2 → XP_021778625.2  ataxin-2 isoform X3

    UniProtKB/TrEMBL
    A0A096MU68
    Conserved Domains (6) summary
    PHA03247
    Location:923 → 1249
    PHA03247; large tegument protein UL36; Provisional
    COG5180
    Location:348 → 493
    PBP1; PAB1-binding protein PBP1, interacts with poly(A)-binding protein [RNA processing and modification]
    PRK12323
    Location:562 → 753
    PRK12323; DNA polymerase III subunit gamma/tau
    pfam07145
    Location:904 → 919
    PAM2; Ataxin-2 C-terminal region
    pfam06741
    Location:403 → 464
    LsmAD; LsmAD domain
    pfam14438
    Location:259 → 335
    SM-ATX; Ataxin 2 SM domain

  13. XM_021922949.2 → XP_021778641.2  ataxin-2 isoform X19

    Conserved Domains (5) summary
    COG5180
    Location:348 → 493
    PBP1; PAB1-binding protein PBP1, interacts with poly(A)-binding protein [RNA processing and modification]
    PRK12323
    Location:562 → 753
    PRK12323; DNA polymerase III subunit gamma/tau
    pfam06741
    Location:403 → 464
    LsmAD; LsmAD domain
    pfam09770
    Location:902 → 1160
    PAT1; Topoisomerase II-associated protein PAT1
    pfam14438
    Location:259 → 335
    SM-ATX; Ataxin 2 SM domain

  14. XM_021922941.2 → XP_021778633.2  ataxin-2 isoform X12

    UniProtKB/TrEMBL
    A0A2I3N4C8
    Conserved Domains (6) summary
    COG5180
    Location:348 → 493
    PBP1; PAB1-binding protein PBP1, interacts with poly(A)-binding protein [RNA processing and modification]
    PRK07764
    Location:1131 → 1284
    PRK07764; DNA polymerase III subunits gamma and tau; Validated
    PRK12323
    Location:562 → 753
    PRK12323; DNA polymerase III subunit gamma/tau
    pfam06741
    Location:403 → 464
    LsmAD; LsmAD domain
    pfam09770
    Location:902 → 1160
    PAT1; Topoisomerase II-associated protein PAT1
    pfam14438
    Location:259 → 335
    SM-ATX; Ataxin 2 SM domain

  15. XM_021922935.2 → XP_021778627.2  ataxin-2 isoform X5

    UniProtKB/TrEMBL
    A0A096MU68
    Conserved Domains (5) summary
    COG5180
    Location:348 → 493
    PBP1; PAB1-binding protein PBP1, interacts with poly(A)-binding protein [RNA processing and modification]
    PRK12323
    Location:562 → 753
    PRK12323; DNA polymerase III subunit gamma/tau
    pfam06741
    Location:403 → 464
    LsmAD; LsmAD domain
    pfam09770
    Location:902 → 1160
    PAT1; Topoisomerase II-associated protein PAT1
    pfam14438
    Location:259 → 335
    SM-ATX; Ataxin 2 SM domain

  16. XM_021922942.2 → XP_021778634.2  ataxin-2 isoform X13

    Conserved Domains (5) summary
    COG5180
    Location:348 → 493
    PBP1; PAB1-binding protein PBP1, interacts with poly(A)-binding protein [RNA processing and modification]
    PRK12323
    Location:562 → 753
    PRK12323; DNA polymerase III subunit gamma/tau
    pfam06741
    Location:403 → 464
    LsmAD; LsmAD domain
    pfam09770
    Location:902 → 1178
    PAT1; Topoisomerase II-associated protein PAT1
    pfam14438
    Location:259 → 335
    SM-ATX; Ataxin 2 SM domain

  17. XM_021922937.2 → XP_021778629.2  ataxin-2 isoform X7

    UniProtKB/TrEMBL
    A0A2I3N4C8
    Related
    ENSPANP00000042730.2, ENSPANT00000045265.2
    Conserved Domains (7) summary
    TIGR01628
    Location:931 → 1073
    PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
    COG5180
    Location:348 → 493
    PBP1; PAB1-binding protein PBP1, interacts with poly(A)-binding protein [RNA processing and modification]
    PRK12323
    Location:562 → 753
    PRK12323; DNA polymerase III subunit gamma/tau
    pfam07145
    Location:904 → 919
    PAM2; Ataxin-2 C-terminal region
    pfam06741
    Location:403 → 464
    LsmAD; LsmAD domain
    pfam09770
    Location:1025 → 1279
    PAT1; Topoisomerase II-associated protein PAT1
    pfam14438
    Location:259 → 335
    SM-ATX; Ataxin 2 SM domain

  18. XM_021922931.2 → XP_021778623.2  ataxin-2 isoform X1

    UniProtKB/TrEMBL
    A0A096MU68
    Conserved Domains (5) summary
    COG5180
    Location:348 → 493
    PBP1; PAB1-binding protein PBP1, interacts with poly(A)-binding protein [RNA processing and modification]
    PRK12323
    Location:562 → 753
    PRK12323; DNA polymerase III subunit gamma/tau
    pfam06741
    Location:403 → 464
    LsmAD; LsmAD domain
    pfam09770
    Location:902 → 1178
    PAT1; Topoisomerase II-associated protein PAT1
    pfam14438
    Location:259 → 335
    SM-ATX; Ataxin 2 SM domain

  19. XM_031650759.1 → XP_031506619.1  ataxin-2 isoform X11

    UniProtKB/TrEMBL
    A0A2I3N4C8, A0A8I5N904
    Related
    ENSPANP00000049686.1, ENSPANT00000075909.1
    Conserved Domains (6) summary
    PHA03247
    Location:923 → 1239
    PHA03247; large tegument protein UL36; Provisional
    COG5180
    Location:348 → 493
    PBP1; PAB1-binding protein PBP1, interacts with poly(A)-binding protein [RNA processing and modification]
    PRK12323
    Location:562 → 753
    PRK12323; DNA polymerase III subunit gamma/tau
    pfam07145
    Location:904 → 919
    PAM2; Ataxin-2 C-terminal region
    pfam06741
    Location:403 → 464
    LsmAD; LsmAD domain
    pfam14438
    Location:259 → 335
    SM-ATX; Ataxin 2 SM domain

  20. XM_021922940.2 → XP_021778632.2  ataxin-2 isoform X10

    UniProtKB/TrEMBL
    A0A2I3N4C8
    Conserved Domains (6) summary
    PHA03247
    Location:923 → 1241
    PHA03247; large tegument protein UL36; Provisional
    COG5180
    Location:348 → 493
    PBP1; PAB1-binding protein PBP1, interacts with poly(A)-binding protein [RNA processing and modification]
    PRK12323
    Location:562 → 753
    PRK12323; DNA polymerase III subunit gamma/tau
    pfam07145
    Location:904 → 919
    PAM2; Ataxin-2 C-terminal region
    pfam06741
    Location:403 → 464
    LsmAD; LsmAD domain
    pfam14438
    Location:259 → 335
    SM-ATX; Ataxin 2 SM domain
Nucleotide Protein
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