Conserved Protein Domain Family
PBP1

?
COG5180: PBP1 (this model, PSSM-Id:227507 is obsolete and has been replaced by 444064)
PAB1-binding protein PBP1, interacts with poly(A)-binding protein [RNA processing and modification]
Statistics
?
PSSM-Id: 227507
Aligned: 3 rows
Threshold Bit Score: 773.127
Created: 7-Oct-2002
Updated: 23-Jan-2015
Structure
?
Aligned Rows:
Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
19112476   1 MATRSVSMKQTSQRAAS----------PNKTQGAKKWS------AVAAR---------GSKIAQSATN--------DHRN 47  fission yeast
19074902   1 --------------------------mDNYTIAICFKN-------NPSR-----------IIGAFLSNe------dGKVK 30  Encephalitozoon cun...
1723730    3 GNFRKRDSSTNSRKGGNsdsnytnggvPNQNNSSMFYEnpeitrNFDDRqdyllansiGSDVTVTVTSgvkytgllVSCN 82  baker's yeast
19112476  48 VES---IKVVPEN-RVRG-GVAAKATDSSSNV--------------------TSLASSEENVSSVSGS-AKSNNSQQRV- 100 fission yeast
19074902  31 LEN---A-FFETNpGVVFpTISISESDIITVTk------------------mNGRQAEKGKDASERGS-GAKEDSGWSS- 86  Encephalitozoon cun...
1723730   83 LEStngIDVVLRFpRVADsGVSDSVDDLAKTLgetllihgedvaelelknidLSLDEKWENSKAQETTpARTNIEKERVn 162 baker's yeast
19112476 101 --------WKTDVAISAEKRtETRQRELRRWMPDPEDAGVPLA-GLEESTDNVEWDQFATNEKLFGVKSHFDEDLYTSRI 171 fission yeast
19074902  87 --------FRTDSEISGGPK-------EMPEAVLPKAADLEKS----LEEECKDWNQFEANSKLFNIDSRFDEEEYMEVL 147 Encephalitozoon cun...
1723730  163 gesnevtkFRTDVDISGSGR-EIKERKLEKWTPEEGAEHFDINkGKALEDDSASWDQFAVNEKKFGVKSTFDEHLYTTKI 241 baker's yeast
19112476 172 DRSHPKYKEKEQEADRIAKEIEGTVTN-NIHIAEERGLKVDDSGLDEEDLYSGVHRSIDVVRNYTRSN---AYNKNNKDQ 247 fission yeast
19074902 148 DKSSESYKSKVSMARRIEKEIMLSATT-DAHRLEERGLGN--S-VENEDIYSSVVR--EECRSAESKS---ASAMEVRQE 218 Encephalitozoon cun...
1723730  242 NKDDPNYSKRLQEAERIAKEIESQGTSgNIHIAEDRGIIIDDSGLDEEDLYSGVDRRGDELLAALKSNskpNSNKGNRYV 321 baker's yeast
19112476 248 KPKNHEAPHqHPQQKVVPPDDPAIVSHRHLALPRAPGPDSrAAERFFNARRKAGPLSRREKEGQIKEFMQFSQSLKIGSL 327 fission yeast
19074902 219 KVAAAKQPA----DDGTKRKMVIEIEGLSLLENRKDEAVS---KAVS--SKSEGPSSGQEEGKNGKPKKSVRYGWMHTKF 289 Encephalitozoon cun...
1723730  322 PPTLRQQPH-HMDPAIISSSNSNKNENAVSTDTSTPAAAG-APEGKPPQKTSKNKKSLSSKEAQIEELKKFSEKFKVP-Y 398 baker's yeast
19112476 328 DSKqpsstKSVAEVKVADEKQLPDASSQATPADSKEPrkeEAEKPVTSATEVSSEKVEKVDgntSSPSKEEEKPSTEPEK 407 fission yeast
19074902 290 DSS-----KNLLEMIKSKFKSVFDIGGGELKWGTGPN---WEAAAKSIAKKVQKPGKTSVR------KAAKKSPVSK--- 352 Encephalitozoon cun...
1723730  399 DIP-----KDMLEVLKRSSSTLKSNSSLPPKPISKTP----SAKTVSPTTQISAGKSESRR---SGSNISQGQSSTGHTT 466 baker's yeast
19112476 408 PSVVTQRKETTGTKLGTKLnakaisFKPNVAAPVFTPGKFTIPSKPAPVNASRPMMPQQSNNseasipsttpQSPSVVsn 487 fission yeast
19074902     --------------------------------------------------------------------------------     Encephalitozoon cun...
1723730  467 RSSTSLRRRNHGSFFGAKN------PHTNDAKRVLFGKSFNMFIKSKEAHDEKKKGDDASEN----------MEPFFI-- 528 baker's yeast
19112476 488 gENKPSSSPVFFNgpvssEKEPILDNFnvFKnvgeehqgaeqiDKPFSCPPTWNTgpnsLQQTIANSrpEGNSGSAKKAA 567 fission yeast
19074902     --------------------------------------------------------------------------------     Encephalitozoon cun...
1723730  529 -EKPYFTAPTWLN-----TIEESYKTF--FP------------DEDTAIQEAQTR----FQQRQLNS--MGNAVPGMNPA 582 baker's yeast
19112476 568 AANPMIPSIVLPnSAMPSAMpmyPTPTMPYIPVGyPVPGYTPYMrnPsQHTSVAPS-PNGTPTSGnssTVGSPMIGYMAP 646 fission yeast
19074902     --------------------------------------------------------------------------------     Encephalitozoon cun...
1723730  583 MGMNMGGMMGFP-MGGPSAS---PNPMMNGFAAG-SMGMYMPFQ--P-QPMFYHPSmPQMMPVMG---SNGAEEGGGNIS 651 baker's yeast
19112476 647 QFIPPYAMPQFPpsGNGRGASApatyfVPqmGGMMAYTMNGVPPMYgqyAPNNGMMnMHYpmYGDSRrsnsqrsfnssng 726 fission yeast
19074902     --------------------------------------------------------------------------------     Encephalitozoon cun...
1723730  652 PHVPAGFMAAGP--GAPMGAFG-----YP--GGIPFQGMMGSGPSG---MPANGSA-MHS--HGHSR------------- 703 baker's yeast
19112476 727 krsNVHKNNNASntfsHSNASTSSSL 752 fission yeast
19074902     --------------------------     Encephalitozoon cuniculi
1723730  704 ---NYHQTSHHG----HHNSSTSGHK 722 baker's yeast
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap