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Source database (GenBank or RefSeq) File type

Panu_3.0

Organism name:

Papio anubis (olive baboon)

Isolate:

1X1155

Sex:

female

BioSample:

SAMN02981400

BioProject:

PRJNA54005

Submitter:

Human Genome Sequencing Center

Date:

2017/04/20

Synonyms:

papAnu4

Assembly level:

Chromosome

Genome representation:

full

Excluded from RefSeq:

superseded by newer assembly for species

GenBank assembly accession:

GCA_000264685.2 (latest)

RefSeq assembly accession:

GCF_000264685.3 (suppressed) see latest RefSeq assembly for this species

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in RefSeq: chromosome MT

Data displayed for GenBank version

WGS Project:

AHZZ02

Assembly method:

CABOG v. 6.1; ATLAS-LINK v. 1.0; ATLAS-GAPFILL v. 2.0; PBJelly2 v. 14.9.9; Pilon v. 1.18

Genome coverage:

104.0x

Sequencing technology:

Sanger 3730; 454 FLX; Illumina; PacBio

IDs: 1082401 [UID] 4420218 [GenBank] 4682678 [RefSeq]

See Genome Information for Papio anubis

Pathogen Detection Resources

There are 3 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_000264685.2	≠	GCF_000264685.3	Panu_3.0	Chromosome	Latest GenBank, RefSeq suppressed
GCA_000264685.1	≠	GCF_000264685.2	Panu_2.0	Chromosome	Replaced GenBank, RefSeq suppressed
GCA_000264685.1	=	GCF_000264685.1	Panu_2.0	Chromosome	Replaced GenBank, RefSeq suppressed

Comment

Global statistics

Total sequence length	2,959,356,508
Total ungapped length	2,936,988,423
Gaps between scaffolds	7,900
Number of scaffolds	71,134
Scaffold N50	585,721
Scaffold L50	1,481
Number of contigs	118,810
Contig N50	149,817
Contig L50	5,418
Total number of chromosomes and plasmids	21
Number of component sequences (WGS or clone)	118,810

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM001491.2	=	NC_018152.2	0
Chromosome 2	CM001492.2	=	NC_018153.2	0
Chromosome 3	CM001493.2	=	NC_018154.2	0
Chromosome 4	CM001494.2	=	NC_018155.2	0
Chromosome 5	CM001495.2	=	NC_018156.2	0
Chromosome 6	CM001496.2	=	NC_018157.2	0
Chromosome 7	CM001497.2	=	NC_018158.2	0
Chromosome 8	CM001498.2	=	NC_018159.2	0
Chromosome 9	CM001499.2	=	NC_018160.2	0
Chromosome 10	CM001500.2	=	NC_018161.2	0
Chromosome 11	CM001501.2	=	NC_018162.2	0
Chromosome 12	CM001502.2	=	NC_018163.2	0
Chromosome 13	CM001503.2	=	NC_018164.2	0
Chromosome 14	CM001504.2	=	NC_018165.2	0
Chromosome 15	CM001505.2	=	NC_018166.2	0
Chromosome 16	CM001506.2	=	NC_018167.2	0
Chromosome 17	CM001507.2	=	NC_018168.2	0
Chromosome 18	CM001508.2	=	NC_018169.2	0
Chromosome 19	CM001509.2	=	NC_018170.2	0
Chromosome 20	CM001510.2	=	NC_018171.2	0
Chromosome X	CM001511.2	=	NC_018172.2	0
unplaced	n/a	n/a	n/a	63,213

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps	Unspanned Gaps
All	2,959,356,508	71,134	2,936,988,423	585,721	47,676	7,900
Chromosome 1	217,458,864	516	216,761,608	817,728	2,544	515
Chromosome 2	188,283,584	477	187,780,127	656,948	1,630	476
Chromosome 3	181,338,541	567	180,624,644	574,825	2,102	566
Chromosome 4	166,074,386	389	165,567,567	674,297	1,693	388
Chromosome 5	183,742,232	457	183,169,255	723,666	1,889	456
Chromosome 6	175,400,206	518	174,899,566	606,000	1,606	517
Chromosome 7	162,899,863	440	162,389,395	600,440	1,778	439
Chromosome 8	140,346,614	437	139,922,963	642,467	1,377	436
Chromosome 9	125,784,921	337	125,415,786	655,206	1,345	336
Chromosome 10	91,330,067	279	90,995,455	622,125	1,223	278
Chromosome 11	132,960,392	350	132,503,587	682,173	1,550	349
Chromosome 12	128,289,686	311	127,974,393	671,151	1,099	310
Chromosome 13	104,990,034	294	104,668,251	605,945	1,014	293
Chromosome 14	124,513,186	389	124,128,407	610,598	1,357	388
Chromosome 15	108,049,171	291	107,715,971	745,465	1,267	290
Chromosome 16	74,961,506	223	74,604,011	601,240	1,232	222
Chromosome 17	91,399,201	311	91,138,160	628,712	980	310
Chromosome 18	72,530,122	186	72,365,130	662,076	668	185
Chromosome 19	51,387,494	302	50,843,653	317,051	1,752	301
Chromosome 20	72,050,622	180	71,760,314	685,918	938	179
Chromosome X	143,691,637	667	142,768,202	405,323	2,224	666
unplaced	221,874,179	63,213	208,991,978	8,115	16,408	0

Assembly

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Panu_3.0

See Genome Information for Papio anubis

Pathogen Detection Resources

There are 3 assemblies for this organism

History (Show revision history)

Comment

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