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Sample GSM371779 Query DataSets for GSM371779
Status Public on Dec 22, 2009
Title zf_ovary_hal_61945
Sample type RNA
 
Channel 1
Source name zf ovary, exposed to 50 ug haloperidol/L for 96 h
Organism Danio rerio
Characteristics gender: female
age: 5 months
strain: ab wild-type strain
tissue: gonad
sample: 61945
Biomaterial provider from on-site culture unit at US EPA, Duluth, MN, USA
Treatment protocol After 96 h, fish was humanely euthanized in buffered MS-222 (tricaine methanesulfonate) and weighed. Whole gonads were removed, weighed, and preserved in RNAlater.
Growth protocol 25 degrees C. 16:8 light:dark photoperiod. fed liver Artemia
Extracted molecule total RNA
Extraction protocol Ovary samples were transferred to TRI Reagent® (Sigma), homogenized, and extracted following the manufacturer’s protocol. Total RNA was quantified using a Nanodrop® ND-1000 spectrophotometer, and the integrity and purity of the RNA samples was evaluated using an Agilent 2100 Bioanalyzer (Agilent Technologies, Palo Alto, CA, USA) and a RNA Nano Chip Kit (Agilent). Optical density ratios (260/280 nm) for all samples were between 1.97 and 2.08 and RNA integrity numbers (RIN; Agilent) ranged from 5.7-9.3.
Label Cy5
Label protocol RNA from each condition of interest (treatment) was labeled with a Cy5 dye and hybridized onto arrays together with Cy3 labeled RNA taken from a standard reference pool of RNA extracted from sexually mature male and female gonads and brains, and female livers. For the microarray analyses, total RNA was amplified using Agilent low input linear amplification kit according to the process outlined by the manufacturer (Agilent Technologies). Amplified target cRNA (1-5 µg) was labeled with either cyanine-5 or cyanine-3 using ULS aRNA Flurorescent Labeling Kits from Kreatech according to the manufacturers protocol (Kreatech Biotechnology, Amsterdam, The Netherlands). Concentrations of labeled cRNA and the label incorporation was determined using Nanodrop-1000 spectrophotometer.
 
Channel 2
Source name Reference pool
Organism Danio rerio
Characteristics gender: Females and Males
age: 7 months
strain: ab wild-type strain
tissue: gonads and brains from males and females, livers from females
Biomaterial provider from on-site culture unit at US EPA, MED – Duluth, MN, USA
Treatment protocol All fish humanely euthanized in buffered MS-222 (tricaine methanesulfonate)
Growth protocol 25°C, 16:8 light:dark photoperiod, fed live Artemia
Extracted molecule total RNA
Extraction protocol Tissues were thawed, homogenized and total RNA extracted with TRI Reagent® (Sigma-Aldrich, St. Louis, MO) following the manufacturer’s protocol. Total RNA from all tissues and specimens was pooled together. Total RNA was quantified using a nanodrop ND-100 spectrophotometer (Nanodrop technologies, Wilmington, DE). Integrity and purity of RNA samples was evaluated using an Agilent 2100 Bioanalyzer (Agilent Technologies, Paulo Alto, CA) and an RNA Pico Chip Kit (Agilent).
Label Cy3
Label protocol RNA from each condition of interest (treatment) was labeled with a Cy5 dye and hybridized onto arrays together with Cy3 labeled RNA taken from a standard reference pool of RNA extracted from sexually mature male and female gonads and brains, and female livers. For the microarray analyses, total RNA was amplified using Agilent low input linear amplification kit according to the process outlined by the manufacturer (Agilent Technologies). Amplified target cRNA (1-5 µg) was labeled with either cyanine-5 or cyanine-3 using ULS aRNA Flurorescent Labeling Kits from Kreatech according to the manufacturers protocol (Kreatech Biotechnology, Amsterdam, The Netherlands). Concentrations of labeled cRNA and the label incorporation was determined using Nanodrop-1000 spectrophotometer.
 
 
Hybridization protocol All of the labeling and post labeling procedures were conducted in ozone-free enclosure to ensure the integrity of the label. Labeled materials were set up for the fragmentation reaction according to Agilent protocol described in their processing manual, and hybridized overnight in the rotating oven at 65°C in an ozone-free room. The Agilent Oligo Microarray Zebrafish slide, with approximately 21, 000 genes represented was used for the gene expression analyses (4 x 44K format, product 015064). Labeled samples (825 ng) were co-hybridized using sureHyb chambers from Agilent. Wash conditions used were as outlined in the Agilent processing manual (protocol version 4.0).
Scan protocol The arrays were scanned using Agilent scanner (G2505B). Agilent feature extraction software was used for extracting array data; the initial data quality analyses were done using Rosetta Luminator software (Rosetta Biosoftware, Seattle, WA).
Description Sample 61945 - ovary from zebrafish exposed to 50 ug haloperidol/L (nominal) for 96 h.
Mention of trade names or commercial products does not constitute endorsement or recommendation for use.
Data processing Microarray image processing and data pre-processing were performed using Agilent's Feature Extraction Software (v 9.5). The intensity of each spot was summarized by mean pixel intensity. A log10 transformed signal ratio between the experimental (Cy5) and reference (Cy3) channel was calculated for each spot.
 
Submission date Feb 17, 2009
Last update date Dec 22, 2009
Contact name Daniel L. Villeneuve
E-mail(s) villeneuve.dan@epa.gov
Organization name US EPA
Department Mid-Continent Ecology Division
Lab National Health and Environmental Effects Research Laboratory
Street address 6201 Congdon Blvd
City Duluth
State/province MN
ZIP/Postal code 55804
Country USA
 
Platform ID GPL6563
Series (2)
GSE14861 Small fish comp tox ZF haloperidol 96 h ovary
GSE15216 Effects of haloperidol on zebrafish and fathead minnow gene expression

Data table header descriptions
ID_REF
VALUE Log10 Cy5/Cy3 representing experimental/reference
ROW Row
COL Col
ACCESSION_STRING Accessions
CHROMOSOMAL_LOCATION Chr coord
SubTypeMask
SubTypeName
ProbeUID
CONTROL_TYPE Control type
SPOT_ID ProbeName
GENE_NAME Gene name
NAME Systematic name
DESCRIPTION Description
PositionX
PositionY
LogRatioError
PValueLogRatio
gSurrogateUsed
rSurrogateUsed
gIsFound
rIsFound
gProcessedSignal
rProcessedSignal
gProcessedSigError
rProcessedSigError
gNumPixOLHi
rNumPixOLHi
gNumPixOLLo
rNumPixOLLo
gNumPix
rNumPix
gMeanSignal
rMeanSignal
gMedianSignal
rMedianSignal
gPixSDev
rPixSDev
gPixNormIQR
rPixNormIQR
gBGNumPix
rBGNumPix
gBGMeanSignal
rBGMeanSignal
gBGMedianSignal
rBGMedianSignal
gBGPixSDev
rBGPixSDev
gBGPixNormIQR
rBGPixNormIQR
gNumSatPix
rNumSatPix
gIsSaturated
rIsSaturated
gIsLowPMTScaledUp
rIsLowPMTScaledUp
PixCorrelation
BGPixCorrelation
gIsFeatNonUnifOL
rIsFeatNonUnifOL
gIsBGNonUnifOL
rIsBGNonUnifOL
gIsFeatPopnOL
rIsFeatPopnOL
gIsBGPopnOL
rIsBGPopnOL
IsManualFlag
gBGSubSignal
rBGSubSignal
gBGSubSigError
rBGSubSigError
BGSubSigCorrelation
gIsPosAndSignif
rIsPosAndSignif
gPValFeatEqBG
rPValFeatEqBG
gNumBGUsed
rNumBGUsed
gIsWellAboveBG
rIsWellAboveBG
gBGUsed
rBGUsed
gBGSDUsed
rBGSDUsed
IsNormalization
gDyeNormSignal
rDyeNormSignal
gDyeNormError
rDyeNormError
DyeNormCorrelation
ErrorModel
xDev
gSpatialDetrendIsInFilteredSet
rSpatialDetrendIsInFilteredSet
gSpatialDetrendSurfaceValue
rSpatialDetrendSurfaceValue
SpotExtentX
SpotExtentY
gNetSignal
rNetSignal
gMultDetrendSignal
rMultDetrendSignal
gProcessedBackground
rProcessedBackground
gProcessedBkngError
rProcessedBkngError
IsUsedBGAdjust
gInterpolatedNegCtrlSub
rInterpolatedNegCtrlSub
gIsInNegCtrlRange
rIsInNegCtrlRange
gIsUsedInMD
rIsUsedInMD

Data table
ID_REF VALUE ROW COL ACCESSION_STRING CHROMOSOMAL_LOCATION SubTypeMask SubTypeName ProbeUID CONTROL_TYPE SPOT_ID GENE_NAME NAME DESCRIPTION PositionX PositionY LogRatioError PValueLogRatio gSurrogateUsed rSurrogateUsed gIsFound rIsFound gProcessedSignal rProcessedSignal gProcessedSigError rProcessedSigError gNumPixOLHi rNumPixOLHi gNumPixOLLo rNumPixOLLo gNumPix rNumPix gMeanSignal rMeanSignal gMedianSignal rMedianSignal gPixSDev rPixSDev gPixNormIQR rPixNormIQR gBGNumPix rBGNumPix gBGMeanSignal rBGMeanSignal gBGMedianSignal rBGMedianSignal gBGPixSDev rBGPixSDev gBGPixNormIQR rBGPixNormIQR gNumSatPix rNumSatPix gIsSaturated rIsSaturated gIsLowPMTScaledUp rIsLowPMTScaledUp PixCorrelation BGPixCorrelation gIsFeatNonUnifOL rIsFeatNonUnifOL gIsBGNonUnifOL rIsBGNonUnifOL gIsFeatPopnOL rIsFeatPopnOL gIsBGPopnOL rIsBGPopnOL IsManualFlag gBGSubSignal rBGSubSignal gBGSubSigError rBGSubSigError BGSubSigCorrelation gIsPosAndSignif rIsPosAndSignif gPValFeatEqBG rPValFeatEqBG gNumBGUsed rNumBGUsed gIsWellAboveBG rIsWellAboveBG gBGUsed rBGUsed gBGSDUsed rBGSDUsed IsNormalization gDyeNormSignal rDyeNormSignal gDyeNormError rDyeNormError DyeNormCorrelation ErrorModel xDev gSpatialDetrendIsInFilteredSet rSpatialDetrendIsInFilteredSet gSpatialDetrendSurfaceValue rSpatialDetrendSurfaceValue SpotExtentX SpotExtentY gNetSignal rNetSignal gMultDetrendSignal rMultDetrendSignal gProcessedBackground rProcessedBackground gProcessedBkngError rProcessedBkngError IsUsedBGAdjust gInterpolatedNegCtrlSub rInterpolatedNegCtrlSub gIsInNegCtrlRange rIsInNegCtrlRange gIsUsedInMD rIsUsedInMD
1 -4.27E-01 1 1 260 BrightCorner 0 1 GE_BrightCorner GE_BrightCorner GE_BrightCorner 9851.74 236.638 7.29E-02 4.49E-09 0 0 1 1 2.04E+04 7.64E+03 2.04E+03 7.64E+02 0 0 4 2 59 59 3.43E+04 4.56E+04 33842.1 45741.3 2.33E+03 4.43E+03 2.37E+03 6.04E+03 688 688 4.03E+01 4.92E+01 40 49 7.75E+00 1.32E+01 8.15E+00 1.33E+01 0 0 0 0 1 1 0.71325 0.134266 0 0 0 0 0 0 0 0 0 33932.4 45152 3393.3 4515.29 0 1 1 0 0 1 1 1 1 342.396 421.185 7.75289 13.2033 0 20433.9 7638.93 2043.42 763.909 0 1 -5.87E+00 0 0 342.396 421.185 58.0869 58.0869 34254.2 45552.6 0.928411 0.884276 40.3372 49.189 7.75289 13.2033 0 33926 45143.4 0 0 0 0
2 0.00E+00 1 2 66 Structural 1 1 DarkCorner DarkCorner DarkCorner 9877.11 236.5 6.13E-01 1.00E+00 22.3655 32.5317 1 1 8.14E+00 7.48E+00 8.11E+00 7.45E+00 0 0 1 0 63 63 3.11E+02 3.85E+02 310 379 4.52E+01 6.41E+01 4.74E+01 6.12E+01 518 518 4.15E+01 4.88E+01 41 48.5 7.92E+00 1.29E+01 8.15E+00 1.33E+01 0 0 0 0 0 0 0.454519 0.171803 0 0 0 0 0 0 0 0 0 -31.4879 -35.7229 20.4859 28.6652 0 0 0 0.000101705 0.00147756 1 1 0 0 342.742 421.088 7.91571 12.8729 0 8.14043 7.47583 8.10949 7.44809 0 1 -6.04E-02 0 0 342.742 421.088 56.9804 56.9804 290.699 364.84 0.919453 0.884427 41.5463 48.778 7.91571 12.8729 0 -37.5157 -43.9029 0 0 0 0
3 0.00E+00 1 3 66 Structural 1 1 DarkCorner DarkCorner DarkCorner 9902.16 236.882 6.13E-01 1.00E+00 22.5614 32.5183 1 1 8.21E+00 7.47E+00 8.18E+00 7.45E+00 0 1 1 1 63 63 3.19E+02 3.95E+02 320 399 4.26E+01 6.75E+01 4.15E+01 5.89E+01 520 520 4.08E+01 4.85E+01 41 48 7.90E+00 1.31E+01 8.15E+00 1.33E+01 0 0 0 0 0 0 0.583793 0.156572 0 0 0 0 0 0 0 0 0 -23.9773 -26.1638 20.4859 28.6652 0 0 0 0.00277742 0.0189319 1 1 0 0 342.977 421.005 7.89592 13.1376 0 8.21159 7.47287 8.18038 7.44515 0 1 -6.68E-02 0 0 342.977 421.005 46.5243 46.5243 298.445 374.316 0.911471 0.884791 40.7654 48.4712 7.89592 13.1376 0 -29.7603 -33.944 0 0 0 0
4 0.00E+00 1 4 66 Structural 1 1 DarkCorner DarkCorner DarkCorner 9927.71 236.754 6.13E-01 1.00E+00 22.7385 32.493 1 1 8.28E+00 7.47E+00 8.24E+00 7.44E+00 0 0 4 0 60 60 3.02E+02 3.75E+02 301 376 3.71E+01 5.12E+01 3.35E+01 4.47E+01 508 508 3.95E+01 4.64E+01 39 47 7.02E+00 1.28E+01 6.67E+00 1.33E+01 0 0 0 0 0 0 0.0220721 0.106268 0 0 0 0 1 0 0 0 0 -41.6101 -46.3393 20.4859 28.6652 0 0 0 4.57E-07 4.55E-05 1 1 0 0 343.227 421.006 7.02053 12.7965 0 8.27592 7.46716 8.24446 7.43945 0 1 -7.28E-02 0 0 343.227 421.006 45.1352 45.1352 281.062 354.142 0.904373 0.88548 39.4882 46.3819 7.02053 12.7965 0 -47.1234 -53.6164 0 0 0 0
5 0.00E+00 1 5 66 Structural 1 1 DarkCorner DarkCorner DarkCorner 9952.78 236.75 6.13E-01 1.00E+00 22.8946 32.4608 1 1 8.33E+00 7.46E+00 8.30E+00 7.43E+00 0 1 3 0 60 60 2.98E+02 3.71E+02 305.5 371.5 3.56E+01 5.47E+01 3.84E+01 5.39E+01 514 514 4.04E+01 4.80E+01 40 48 7.67E+00 1.33E+01 8.15E+00 1.48E+01 0 0 0 0 0 0 0.170985 0.144435 0 0 0 0 1 0 0 0 0 -45.7717 -50.0822 20.4859 28.6652 0 0 0 3.78E-08 1.15E-05 1 1 0 0 343.422 420.999 7.66943 13.3083 0 8.33266 7.45983 8.30099 7.43215 0 1 -7.83E-02 0 0 343.422 420.999 45.1352 45.1352 277.095 350.392 0.898204 0.88636 40.4144 47.9591 7.66943 13.3083 0 -51.068 -56.877 0 0 0 0
6 0.00E+00 1 6 66 Structural 1 1 DarkCorner DarkCorner DarkCorner 9978.1 236.803 6.14E-01 1.00E+00 23.0353 32.4216 1 1 8.38E+00 7.45E+00 8.35E+00 7.42E+00 0 0 3 1 62 62 3.14E+02 3.82E+02 314 384.5 3.31E+01 5.74E+01 3.35E+01 5.67E+01 516 516 4.06E+01 4.72E+01 40 47 7.43E+00 1.35E+01 7.41E+00 1.48E+01 0 0 0 0 0 0 0.114916 0.0835322 0 0 0 0 0 0 0 0 0 -29.5854 -38.5809 20.4859 28.6652 0 0 0 0.000249807 0.000617463 1 1 0 0 343.585 421.049 7.42952 13.5157 0 8.38378 7.4509 8.35191 7.42325 0 1 -8.35E-02 0 0 343.585 421.049 44.7812 44.7812 293.445 361.943 0.892719 0.887431 40.626 47.2422 7.42952 13.5157 0 -34.6927 -44.8338 0 0 0 0
7 0.00E+00 1 7 66 Structural 1 1 DarkCorner DarkCorner DarkCorner 10003.6 236.594 6.14E-01 1.00E+00 23.1592 32.3751 1 1 8.43E+00 7.44E+00 8.40E+00 7.41E+00 0 2 3 1 58 58 3.26E+02 3.79E+02 328.5 380.5 3.20E+01 4.46E+01 2.84E+01 4.43E+01 523 523 4.10E+01 4.82E+01 40 48 7.53E+00 1.28E+01 8.15E+00 1.33E+01 0 0 0 0 0 0 -0.0313162 0.179657 0 0 0 0 0 0 0 0 0 -17.3391 -41.7757 20.4859 28.6652 0 0 0 0.0293341 0.000219896 1 1 0 0 343.718 421.103 7.53428 12.834 0 8.42881 7.44027 8.39677 7.41267 0 1 -8.83E-02 0 0 343.718 421.103 47.5395 47.5395 305.824 358.803 0.887943 0.888705 41.0306 48.2409 7.53428 12.834 0 -22.2804 -47.4736 0 0 0 0
8 0.00E+00 1 8 66 Structural 1 1 DarkCorner DarkCorner DarkCorner 10029 236.667 6.14E-01 1.00E+00 23.2686 32.3253 1 1 8.47E+00 7.43E+00 8.44E+00 7.40E+00 0 0 2 1 62 62 3.15E+02 3.87E+02 314 394 3.81E+01 5.99E+01 3.89E+01 6.62E+01 527 527 4.18E+01 4.78E+01 42 48 7.46E+00 1.32E+01 8.15E+00 1.48E+01 0 0 0 0 0 0 0.351843 0.187276 0 0 0 0 0 0 0 0 0 -29.2732 -34.4284 20.4859 28.6652 0 0 0 0.000288398 0.00215831 1 1 0 0 343.822 421.203 7.46231 13.1787 0 8.46858 7.42888 8.43639 7.40131 0 1 -9.26E-02 0 0 343.822 421.203 45.1352 45.1352 293.993 366.249 0.883767 0.890074 41.7571 47.8008 7.46231 13.1787 0 -34.0786 -39.5362 0 0 0 0
9 0.00E+00 1 9 66 Structural 1 1 DarkCorner DarkCorner DarkCorner 10054.5 236.638 6.14E-01 1.00E+00 23.364 32.271 1 1 8.50E+00 7.42E+00 8.47E+00 7.39E+00 0 0 3 0 62 62 3.18E+02 3.92E+02 319.5 392 3.52E+01 6.28E+01 3.73E+01 5.39E+01 523 523 4.13E+01 4.87E+01 41 49 8.07E+00 1.32E+01 8.90E+00 1.41E+01 0 0 0 0 0 0 0.0250479 0.211103 0 0 0 0 0 0 0 0 0 -25.9803 -29.4523 20.4859 28.6652 0 0 0 0.00122582 0.00840551 1 1 0 0 343.932 421.323 8.0685 13.2457 0 8.50327 7.41642 8.47094 7.38891 0 1 -9.67E-02 0 0 343.932 421.323 47.5395 47.5395 297.397 371.346 0.880158 0.891573 41.2677 48.7075 8.0685 13.2457 0 -30.6372 -33.9445 0 0 0 0
10 0.00E+00 1 10 66 Structural 1 1 DarkCorner DarkCorner DarkCorner 10079.7 237.033 6.14E-01 1.00E+00 23.4478 32.2161 1 1 8.53E+00 7.40E+00 8.50E+00 7.38E+00 0 0 1 1 63 63 3.23E+02 3.99E+02 328 403 4.70E+01 5.26E+01 4.82E+01 4.63E+01 508 508 4.09E+01 4.79E+01 41 48 7.43E+00 1.24E+01 7.41E+00 1.26E+01 0 0 0 0 0 0 0.0342856 0.200647 0 0 0 0 0 0 0 0 0 -21.4327 -22.7462 20.4859 28.6652 0 0 0 0.00731742 0.0408589 1 1 0 0 344.099 421.445 7.4305 12.3741 0 8.5337 7.40383 8.50127 7.37636 0 1 -1.00E-01 0 0 344.099 421.445 44.7812 44.7812 302.112 378.173 0.877015 0.893093 40.9075 47.9469 7.4305 12.3741 0 -25.8864 -26.637 0 0 0 0
11 0.00E+00 1 11 66 Structural 1 1 DarkCorner DarkCorner DarkCorner 10105.2 236.853 6.15E-01 1.00E+00 23.5177 32.1563 1 1 8.56E+00 7.39E+00 8.53E+00 7.36E+00 0 0 3 1 63 63 3.31E+02 4.09E+02 336 404 3.63E+01 5.12E+01 3.52E+01 4.60E+01 518 518 4.09E+01 4.83E+01 41 48 7.58E+00 1.32E+01 7.41E+00 1.41E+01 0 0 0 0 0 0 0.232668 0.173339 0 0 0 0 0 0 0 0 0 -12.6851 -12.3337 20.4859 28.6652 0 0 0 0.109568 0.265095 1 1 0 0 344.082 421.651 7.57999 13.2392 0 8.55913 7.39011 8.5266 7.36269 0 1 -1.04E-01 0 0 344.082 421.651 46.1809 46.1809 310.842 388.792 0.874408 0.894752 40.9363 48.3417 7.57999 13.2392 0 -17.1083 -15.5216 0 0 0 0
12 2.31E-01 1 12 ref|NM_131491|gb|BC045873|ens|ENSDART00000010140|tc|TC281274 chr19:10086859-10086918 0 3 0 A_15_P119205 dvr1rbp NM_131491 "Danio rerio decapentaplegic and Vg-related 1, RNA binding protein (dvr1rbp), mRNA [NM_131491]" 10131 236.455 6.49E-02 3.81E-04 0 0 1 1 5.77E+03 9.82E+03 5.77E+02 9.82E+02 2 0 4 0 56 60 9.96E+03 5.55E+04 9787 53668.4 1.15E+03 9.32E+03 9.69E+02 1.11E+04 509 509 4.12E+01 4.85E+01 41 48 7.66E+00 1.35E+01 8.15E+00 1.33E+01 0 0 0 0 0 1 0.83314 0.218797 0 0 0 0 0 0 0 0 0 9619.62 55050.1 962.18 5505.08 0 1 1 1.44E-294 0 1 1 1 1 343.99 421.804 7.66104 13.5204 0 5770.5 9816.28 577.181 981.641 0 1 3.55E+00 0 0 343.99 421.804 55.8519 55.8519 9943.05 55451.4 0.872229 0.896489 41.2417 48.5383 7.66104 13.5204 0 9615.16 55047.6 0 0 0 0
13 -1.28E-01 1 13 ref|NM_001007380|gb|BC085457|ens|ENSDART00000005590|tc|TC270742 chr20:32221024-32221083 0 5 0 A_15_P111700 si:dkey-12h9.10 NM_001007380 "Danio rerio si:dkey-12h9.10 (si:dkey-12h9.10), mRNA [NM_001007380]" 10155.7 236.222 6.26E-02 4.03E-02 0 0 1 1 2.48E+03 1.84E+03 2.48E+02 1.84E+02 0 0 1 0 63 63 5.05E+03 9.48E+03 4920 9264 8.37E+02 1.69E+03 9.22E+02 1.86E+03 509 509 4.20E+01 4.91E+01 42 50 7.51E+00 1.32E+01 7.41E+00 1.41E+01 0 0 0 0 0 0 0.773425 0.159652 0 0 0 0 0 0 0 0 0 4703.68 9058.41 470.814 906.294 0 1 1 3.27E-249 4.49E-271 1 1 1 1 344.161 421.944 7.51251 13.21 0 2475.03 1841.75 247.738 184.267 0 1 -2.05E+00 0 0 344.161 421.944 47.5395 47.5395 5027.29 9459.82 0.870457 0.898153 42.0334 49.1356 7.51251 13.21 0 4699.45 9056.5 0 0 0 0
14 0.00E+00 1 14 gb|BC085572|ens|ENSDART00000012261|tc|TC300530 chr24:23621761-23621820 0 7 0 A_15_P104358 BC085572 BC085572 "Danio rerio cDNA clone IMAGE:7255723, partial cds. [BC085572]" 10181.5 236.278 6.15E-01 1.00E+00 23.6674 31.9741 1 1 8.61E+00 7.35E+00 8.58E+00 7.32E+00 0 0 1 1 65 65 2.69E+02 3.52E+02 265 360 3.42E+01 4.77E+01 3.34E+01 4.97E+01 507 507 4.21E+01 4.78E+01 42 48 7.29E+00 1.25E+01 7.04E+00 1.30E+01 0 0 0 0 0 0 -0.165566 0.204415 0 0 0 0 0 0 0 0 0 -75.0284 -70.2079 20.4859 28.6652 0 0 0 5.10E-17 2.31E-09 1 1 0 0 344.182 422.1 7.28967 12.511 0 8.61361 7.34824 8.58087 7.32098 0 1 -1.12E-01 0 0 344.182 422.1 48.2044 48.2044 248.599 331.367 0.868876 0.899852 42.0552 47.8107 7.28967 12.511 0 -79.1841 -71.4672 0 0 0 0
15 0.00E+00 1 15 gb|BI839867|tc|TC295095 chr13:30680602-30680661 0 9 0 A_15_P100254 BI839867 BI839867 "fq44d05.y1 zebrafish adult brain Danio rerio cDNA clone IMAGE:4834232 5', mRNA sequence [BI839867]" 10207.4 236.427 6.15E-01 1.00E+00 23.7033 31.9149 0 0 8.63E+00 7.33E+00 8.60E+00 7.31E+00 2 0 4 0 58 58 3.48E+02 4.15E+02 348.5 424 4.06E+01 6.35E+01 3.28E+01 6.75E+01 515 515 4.19E+01 4.71E+01 42 48 7.55E+00 1.22E+01 7.04E+00 1.30E+01 0 0 0 0 0 0 0.266993 0.102942 0 0 0 0 0 0 0 0 0 3.88369 -6.8443 20.4896 28.6652 0 0 0 0.62282 0.535696 1 1 0 0 344.203 422.206 7.55039 12.2073 0 8.6267 7.33463 8.59545 7.30742 0 1 -1.15E-01 0 0 344.203 422.206 65 65 327.531 394.837 0.867559 0.901521 41.9282 47.132 7.55039 12.2073 0 -0.191996 -7.50427 1 1 0 0
16 0.00E+00 1 16 gb|CO926485 chr8:23694659-23694718 0 11 0 A_15_P116237 wu:fb44b11 CO926485 "AGENCOURT_30546852 NIH_ZGC_19 Danio rerio cDNA clone IMAGE:7436403 5', mRNA sequence [CO926485]" 10232.2 236.493 6.15E-01 1.00E+00 23.7312 31.8596 1 1 8.64E+00 7.32E+00 8.60E+00 7.29E+00 0 2 1 0 61 61 2.78E+02 3.29E+02 276 332 3.03E+01 5.00E+01 3.41E+01 4.89E+01 508 508 4.18E+01 4.82E+01 42 48 8.01E+00 1.26E+01 8.15E+00 1.26E+01 0 0 0 0 0 0 0.106361 0.0803989 0 0 0 0 0 0 0 0 0 -66.4877 -93.3096 20.4859 28.6652 0 0 0 2.89E-14 2.42E-14 1 1 0 0 344.143 422.359 8.00897 12.6407 0 8.63684 7.32192 8.60401 7.29476 0 1 -1.17E-01 0 0 344.143 422.359 47.2035 47.2035 257.101 308.524 0.866541 0.903085 41.8327 48.1969 8.00897 12.6407 0 -70.5605 -93.3446 0 0 0 0
17 -1.36E+00 1 17 gb|CO353413 chr13:10182030-10181971 0 13 0 A_15_P105104 CO353413 CO353413 "DR_ATE_FL14_G04 adult testis full-length (TLL) Danio rerio cDNA, mRNA sequence [CO353413]" 10257.4 236.147 1.71E-01 2.09E-15 0 31.8042 1 1 1.68E+02 7.38E+00 1.88E+01 7.36E+00 0 0 0 0 65 65 7.47E+02 3.58E+02 718 362 1.10E+02 5.64E+01 1.24E+02 5.41E+01 516 516 4.18E+01 4.83E+01 41 49 7.19E+00 1.27E+01 7.60E+00 1.19E+01 0 0 0 0 0 0 0.0805938 0.0788304 0 0 0 0 0 0 0 0 0 402.824 -64.2724 45.1923 28.6652 0 1 0 4.41E-95 3.39E-08 1 1 1 0 344.083 422.472 7.19225 12.7021 0 167.641 7.38315 18.8074 7.35576 0 1 -7.94E+00 0 0 344.083 422.472 48.8603 48.8603 726.353 337.675 0.865763 0.904658 41.814 48.2694 7.19225 12.7021 0 398.764 -63.7051 0 0 0 0
18 2.87E-02 1 18 ref|NM_001007415|gb|BC085370|tc|TC296986 chr18:32004400-32004459 0 15 0 A_15_P100012 zgc:101567 NM_001007415 "Danio rerio zgc:101567 (zgc:101567), mRNA [NM_001007415]" 10282.9 236.507 6.15E-02 6.41E-01 0 0 1 1 4.66E+03 4.98E+03 4.66E+02 4.98E+02 0 0 0 0 62 62 8.43E+03 2.73E+04 8139 26151 1.54E+03 5.18E+03 1.66E+03 6.38E+03 495 495 4.14E+01 4.83E+01 41 49 6.92E+00 1.26E+01 7.41E+00 1.26E+01 0 0 0 0 0 1 0.883105 0.0655523 0 0 0 0 0 0 0 0 0 8085.1 26856.2 808.769 2685.77 0 1 1 1.50E-283 0 1 1 1 1 343.919 422.187 6.91562 12.6453 1 4657.31 4975.16 465.88 497.544 0 1 4.66E-01 0 0 343.919 422.187 48.5334 48.5334 8408.46 27257.8 0.865026 0.906105 41.4121 48.2848 6.91562 12.6453 0 8080.94 26856.9 0 0 0 0
19 -3.76E-01 1 19 ens|ENSDART00000027822|tc|TC273737 chr23:14039766-14039707 0 17 0 A_15_P106735 ENSDART00000027822 ENSDART00000027822 "Q7XXR9 (Q7XXR9) Katanin, partial (45%) [TC273737]" 10308.3 236.014 7.18E-02 1.61E-07 0 0 1 1 5.32E+02 2.24E+02 5.40E+01 2.34E+01 1 1 0 1 62 62 1.54E+03 1.36E+03 1460 1315 2.31E+02 1.91E+02 2.30E+02 1.88E+02 521 521 4.20E+01 4.73E+01 42 47 7.36E+00 1.24E+01 7.41E+00 1.33E+01 0 0 0 0 0 0 0.492097 0.0621711 0 0 0 0 0 0 0 0 0 1194.34 935.493 121.179 97.8425 0 1 1 1.75E-162 9.15E-127 1 1 1 1 343.769 422.055 7.3617 12.3977 0 532.157 223.818 53.9928 23.409 0 1 -5.24E+00 0 0 343.769 422.055 47.2035 47.2035 1517.56 1337.02 0.864554 0.907535 41.9616 47.3301 7.3617 12.3977 0 1190.12 936.616 0 0 0 0
20 0.00E+00 1 20 gb|AI584284 chr5:14118483-14118424 0 19 0 A_15_P103037 wu:fb83e09 AI584284 "fb83e09.x1 Zebrafish WashU MPIMG EST Danio rerio cDNA clone IMAGE:3718504 3', mRNA sequence [AI584284]" 10333.8 236.227 6.16E-01 1.00E+00 23.799 31.6594 1 1 8.66E+00 7.28E+00 8.63E+00 7.25E+00 1 0 1 0 62 62 2.46E+02 3.16E+02 246 321.5 3.20E+01 5.36E+01 3.02E+01 5.65E+01 515 515 4.24E+01 4.82E+01 42 48 7.79E+00 1.30E+01 8.15E+00 1.41E+01 0 0 0 0 0 0 0.276576 0.0978456 0 0 0 0 0 0 0 0 0 -98.1683 -105.852 20.4859 28.6652 0 0 0 9.96E-25 3.03E-17 1 1 0 0 343.668 422.078 7.79022 12.9674 0 8.66157 7.27586 8.62865 7.24887 0 1 -1.23E-01 0 0 343.668 422.078 45.835 45.835 224.945 295.701 0.864073 0.908796 42.365 48.1942 7.79022 12.9674 0 -102.416 -104.228 0 0 0 0

Total number of rows: 44407

Table truncated, full table size 32230 Kbytes.




Supplementary file Size Download File type/resource
GSM371779.txt.gz 13.9 Mb (ftp)(http) TXT
Processed data included within Sample table
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