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Status
Public on Mar 07, 2008
Title
Agilent-015064 D. rerio (Zebrafish) Oligo Microarray 4x44K G2519F (Feature Number version)
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Danio rerio Manufacturer
Agilent Technologies
Manufacture protocol
see manufacturer's web site at http://www.agilent.com/
Catalog number
G2519F
Description
Submission date
Mar 07, 2008
Last update date
Dec 06, 2012
Organization
Agilent Technologies
E-mail(s)
cag_sales-na@agilent.com Phone
877-424-4536
URL
http://www.agilent.com Department
Street address
City
Palo Alto
State/province
CA
ZIP/Postal code
94304
Country
USA
Samples (136)
GSM275503 , GSM275504 , GSM275538 , GSM275539 , GSM275540 , GSM275541
GSM275542 ,
GSM275543 ,
GSM275545 ,
GSM275549 ,
GSM275550 ,
GSM275553 ,
GSM275559 ,
GSM275565 ,
GSM275868 ,
GSM275939 ,
GSM275941 ,
GSM275942 ,
GSM275943 ,
GSM275944 ,
GSM275945 ,
GSM275946 ,
GSM275947 ,
GSM275948 ,
GSM275949 ,
GSM275950 ,
GSM275952 ,
GSM275954 ,
GSM276591 ,
GSM276682 ,
GSM276685 ,
GSM276690 ,
GSM276691 ,
GSM276692 ,
GSM276700 ,
GSM276701 ,
GSM276702 ,
GSM276703 ,
GSM276704 ,
GSM276705 ,
GSM276706 ,
GSM276707 ,
GSM276708 ,
GSM276709 ,
GSM276710 ,
GSM276711 ,
GSM276787 ,
GSM276788 ,
GSM276795 ,
GSM276796 ,
GSM276797 ,
GSM276798 ,
GSM276799 ,
GSM276801 ,
GSM276802 ,
GSM276803 ,
GSM276804 ,
GSM276805 ,
GSM276806 ,
GSM276807 ,
GSM371657 ,
GSM371731 ,
GSM371738 ,
GSM371743 ,
GSM371750 ,
GSM371751 ,
GSM371752 ,
GSM371753 ,
GSM371756 ,
GSM371776 ,
GSM371778 ,
GSM371779 ,
GSM461993 ,
GSM461994 ,
GSM461995 ,
GSM461996 ,
GSM461997 ,
GSM461998 ,
GSM461999 ,
GSM462000 ,
GSM462001 ,
GSM462002 ,
GSM462003 ,
GSM462004 ,
GSM553412 ,
GSM553413 ,
GSM553414 ,
GSM553415 ,
GSM553416 ,
GSM553417 ,
GSM553418 ,
GSM553419 ,
GSM685618 ,
GSM685619 ,
GSM685620 ,
GSM685621 ,
GSM685622 ,
GSM685623 ,
GSM685624 ,
GSM685625 ,
GSM685626 ,
GSM685627 ,
GSM685628 ,
GSM685629 ,
GSM685630 ,
GSM685631 ,
GSM685632 ,
GSM685633 ,
GSM685634 ,
GSM685635 ,
GSM685636 ,
GSM685637 ,
GSM685638 ,
GSM685639 ,
GSM685640 ,
GSM685641 ,
GSM685642 ,
GSM685643 ,
GSM685644 ,
GSM685645 ,
GSM685646 ,
GSM685647 ,
GSM685648 ,
GSM685649 ,
GSM931140 ,
GSM931141 ,
GSM931142 ,
GSM931143 ,
GSM1323538 ,
GSM1323539 ,
GSM1323540 ,
GSM1323541 ,
GSM1323542 ,
GSM1323543 ,
GSM1323544 ,
GSM1323545 Series (8)
GSE10951 Hypoxia alters gene expression in the gonads of zebrafish
GSE14861 Small fish comp tox ZF haloperidol 96 h ovary
GSE15216 Effects of haloperidol on zebrafish and fathead minnow gene expression
GSE18566 Gene expression analysis of diet induced obesity model zebrafish
GSE22221 Comparison of retinal gene expression in wild-type and XOPS-mCFP (rod degeneration) transgenic zebrafish
GSE27680 Transcriptional Response of Zebrafish Embryos Exposed to Neurotoxic Compounds Reveals a Muscle Activity Dependent hspb11 Expression
GSE37970 MeHg exposure zebrafish embryos vs control
GSE54754 Differential gene expression in 2 days old zebrafish after glucocerebrosidase (GBA1) morpholino-mediated knockdown
Relations Alternative to
GPL7302
Data table header descriptions ID Agilent feature number
COL Column
ROW Row
NAME Name
SPOT_ID Spot identifier
CONTROL_TYPE Control type
REFSEQ RefSeqAccession
GB_ACC GenBankAccession
GENE Entrez Gene ID
GENE_SYMBOL Gene Symbol
GENE_NAME Gene Name
UNIGENE_ID UnigeneID
ENSEMBL_ID EnsemblID
TIGR_ID TIGRID
ACCESSION_STRING Accession String
CHROMOSOMAL_LOCATION Chromosomal Location
CYTOBAND Cytoband
DESCRIPTION Description
GO_ID GoIDs
SEQUENCE
Data table ID COL ROW NAME SPOT_ID CONTROL_TYPE REFSEQ GB_ACC GENE GENE_SYMBOL GENE_NAME UNIGENE_ID ENSEMBL_ID TIGR_ID ACCESSION_STRING CHROMOSOMAL_LOCATION CYTOBAND DESCRIPTION GO_ID SEQUENCE 1
266
170
GE_BrightCorner
GE_BrightCorner
pos
2
266
168
DarkCorner
DarkCorner
pos
3
266
166
DarkCorner
DarkCorner
pos
4
266
164
DarkCorner
DarkCorner
pos
5
266
162
DarkCorner
DarkCorner
pos
6
266
160
DarkCorner
DarkCorner
pos
7
266
158
DarkCorner
DarkCorner
pos
8
266
156
DarkCorner
DarkCorner
pos
9
266
154
DarkCorner
DarkCorner
pos
10
266
152
DarkCorner
DarkCorner
pos
11
266
150
DarkCorner
DarkCorner
pos
12
266
148
NM_131491
A_15_P119205
FALSE
NM_131491
NM_131491 30967 dvr1rbp
decapentaplegic and Vg-related 1, RNA binding protein
Dr.8280
ENSDART00000010140
TC358716
ref|NM_131491|gb|BC045873|ens|ENSDART00000010140|tc|TC358716
chr19:14781619-14781678
Danio rerio decapentaplegic and Vg-related 1, RNA binding protein (dvr1rbp), mRNA [NM_131491]
GO:0000166(nucleotide binding)|GO:0003676(nucleic acid binding)|GO:0003723(RNA binding)
GGCCAGGAAACCAAGTTAATATGCATTTTACTGATCTACCTCAGGCTAGAGTACCTCAGA
13
266
146
NM_001007380
A_15_P111700
FALSE
NM_001007380
NM_001007380 492508 si:dkey-12h9.10
si:dkey-12h9.10
Dr.79574
ENSDART00000005590
TC308300
ref|NM_001007380|ref|XM_001330966|gb|BC085457|ens|ENSDART00000005590
chr20:27677113-27677172
Danio rerio si:dkey-12h9.10 (si:dkey-12h9.10), mRNA [NM_001007380]
GO:0007275(multicellular organismal development)|GO:0008270(zinc ion binding)|GO:0016563(transcriptional activator activity)|GO:0045941(positive regulation of transcription)
GAATCACGCTTGATAGTACTGATACTAATGTTCAATGTGCGAAGTCACACAGTATTTCCA
14
266
144
BC085572
A_15_P104358
FALSE
XM_001338288
BC085572 553276 rsu1
Ras suppressor protein 1
Dr.79447
ENSDART00000066593
TC316012
gb|BC085572|ens|ENSDART00000066593|ref|XM_001338288|tc|TC316012
chr24:37138964-37138905
Danio rerio hypothetical protein LOC553276, mRNA (cDNA clone IMAGE:7255723), partial cds. [BC085572]
GO:0005515(protein binding)
AATGACCTCATCTCTCTACCCAGAGAGATTGGAGATCTGACTCAGCTGAAGGAACTTCAT
15
266
142
BI839867
A_15_P100254
FALSE
BI839867 Dr.84575
TC337596
gb|BI839867|tc|TC337596
chr13:45452647-45452588
fq44d05.y1 zebrafish adult brain Danio rerio cDNA clone IMAGE:4834232 5', mRNA sequence [BI839867]
TCATTTAGCTGAGGGGCTGATGGTAAACCATTTACTAGTGTATCCTAGTGTATTTCCTAG
16
266
140
A_15_P116237
A_15_P116237
FALSE
GAAACTAGGAAAATAAATCAGCCCTACGTTTAAGCAGATAGATGTTGGGCTTGGAACAAC
17
266
138
CO353413
A_15_P105104
FALSE
CO353413 Dr.92236
gb|CO353413
chr13:17790138-17790197
DR_ATE_FL14_G04 adult testis full-length (TLL) Danio rerio cDNA, mRNA sequence [CO353413]
TGTCTTGCTGAGATATAACAGATTCTTTTGCACAGATAACTTCCAGATCCTCCCACCGAA
18
266
136
NM_001007415
A_15_P100012
FALSE
NM_001007415
NM_001007415 492774 glmnl
glomulin, like
Dr.9109
ENSDART00000081094
TC302844
ref|NM_001007415|gb|BC085370|ens|ENSDART00000081094|tc|TC302844
chr2:8813915-8813974
Danio rerio glomulin, like (glmnl), mRNA [NM_001007415]
GO:0003674(molecular_function)|GO:0005575(cellular_component)|GO:0008150(biological_process)
CTGTGAGGGAAATGTTTCGGCAGTGCTCTTCTCTGATTTTCCTACGTTAAATGATCCCTT
19
266
134
NM_001037414
A_15_P106735
FALSE
NM_001037414
NM_001037414 641431 zgc:123350
zgc:123350
Dr.85176
TC304753
ref|NM_001037414|ref|XM_001331210|gb|BC108056|tc|TC304753
chr10:4701986-4702045
Danio rerio zgc:123350 (zgc:123350), mRNA [NM_001037414]
GO:0000166(nucleotide binding)|GO:0005524(ATP binding)|GO:0005579(membrane attack complex)|GO:0008150(biological_process)|GO:0016020(membrane)|GO:0017111(nucleoside-triphosphatase activity)
ATGGATAGATACACAGCCTGGGAGAAAGAGTATGAGTCTGTCTGAAACATCAGCTAGGCA
20
266
132
A_15_P103037
A_15_P103037
FALSE
TTATGCGCCTAACCTGCATTCCATTAAAAGCATAAACCCCAGTGGGATTCCTTTATTTAG
45220 15269 Kbytes .Supplementary file Size Download File type/resource GPL6563_old_annotations.txt.gz
4.6 Mb
(ftp) (http) TXT
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