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Sample GSM2355445 Query DataSets for GSM2355445
Status Public on Mar 29, 2017
Title genomic DNA from umbilical cord blood 130
Sample type genomic
 
Source name DGDM_umbilical cord blood
Organism Homo sapiens
Characteristics sample group: DGDM
maternal age (yr): 28
mode of birth: unassisted vaginal birth
gestational week: 41
birth weight (g): 4050
gender: male
blood ph: 7.29
maternal bmi: 29
maternal height (cm): 155
weight before pregnancy (kg): 70
weight before birth(kg): 83
hba1c: 5,90
nicotine consumption: Non_Smoker
placenta weight: n.a
Treatment protocol After collection it was immediately frozen at -80°C until further use
Growth protocol Umbilical cord blood from newborns was collected by obstetricians
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was extracted and purified using Qiagen FlexiGene DNA Kit according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
 
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450K Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description SAMPLE 92
Data processing BeadStudio software v3.2, Normalized (dasen and BMIQ) Beta values; the non_normalized.txt contains Unmethylated and methylated signal intensities.
 
Submission date Oct 19, 2016
Last update date Mar 29, 2017
Contact name Marcus Dittrich
Organization name University of Würzburg
Department Biozentrum
Street address Biozentrum, Am Hubland
City Würzburg
ZIP/Postal code 97074
Country Germany
 
Platform ID GPL13534
Series (1)
GSE88929 Epigenetic signatures of gestational diabetes mellitus on ATP5A1, PRKCH, SLC17A4 and HIF3A cord blood methylation

Data table header descriptions
ID_REF
VALUE normalized Average Beta
Detection Pval

Data table
ID_REF VALUE Detection Pval
cg13869341 0.87711523608442 0
cg14008030 0.571515807063583 0
cg12045430 0.096413866374305 0
cg20826792 0.227733399296926 0
cg00381604 0.0865262495223181 0
cg20253340 0.466004215797699 0
cg21870274 0.846976770896221 0
cg03130891 0.113843191497138 0
cg24335620 0.743698505816222 0
cg16162899 0.779287859544806 0
cg17149495 0.843637478116901 0
cg22802167 0.92327849276985 0
cg24669183 0.804432032337721 0
cg17308840 0.405021118367232 0
cg17866181 0.931432984149364 0
cg24159721 0.123978724608142 0
cg15174812 0.156135069178109 0
cg08477687 0.308430118864572 0
cg00034556 0.312153053282654 0
cg00645010 0.107749398671128 0

Total number of rows: 455307

Table truncated, full table size 13873 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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