|
| Status |
Public on Feb 13, 2017 |
| Title |
genomic DNA from PBMC 6 |
| Sample type |
genomic |
| |
|
| Source name |
PBMC 6
|
| Organism |
Homo sapiens |
| Characteristics |
gender: Male
cell type: peripheral blood mononuclear cells
group: Smoker
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
genomic DNA was extracted and purified from PBMC samples using QIAamp DNA Blood Mini Kit according to standard instructions
|
| Label |
Cy5 and Cy3
|
| Label protocol |
Standard Illumina Protocol
|
| |
|
| Hybridization protocol |
bisulfite converted DNA was amplified, fragmented and hybridized to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
|
| Scan protocol |
Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
|
| Description |
smoker PBMC sample
|
| Data processing |
Genome Studios V2011.1
|
| |
|
| Submission date |
Jul 18, 2014 |
| Last update date |
Feb 13, 2017 |
| Contact name |
Robert A Philibert |
| E-mail(s) |
robert-philibert@uiowa.edu
|
| Phone |
3193534986
|
| Organization name |
University of Iowa
|
| Department |
Psychiatry
|
| Street address |
MEB, 500 Newton Road, Room 2-126D
|
| City |
Iowa City |
| State/province |
Iowa |
| ZIP/Postal code |
52242 |
| Country |
USA |
| |
|
| Platform ID |
GPL13534 |
| Series (1) |
| GSE59550 |
Ethnic specific genetic variation alters smoking associated DNA methylation at HIV co-receptor GPR15 |
|
