|
| Status |
Public on Jul 08, 2014 |
| Title |
genomic DNA from formalin fixed paraffin embedded nephrogenic rest 19 |
| Sample type |
genomic |
| |
|
| Source name |
nephrogenic rest 19
|
| Organism |
Homo sapiens |
| Characteristics |
tissue: nephrogenic rest
matched trios: matched trio 17
matched pairs: NA
Sex: F
laterality: NA
overall tumour histology: NA
disease state: precursor
age (months): 12
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
DNA was extracted from formalin fixed paraffin embedded tissue using the Dneasy kit (QIAGEN)
|
| Label |
Cy5 and Cy3
|
| Label protocol |
Standard Illumina Protocol
|
| |
|
| Hybridization protocol |
bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
|
| Scan protocol |
Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
|
| Description |
SAMPLE 55
|
| Data processing |
BeadStudio software v3.2
|
| |
|
| Submission date |
Jul 07, 2014 |
| Last update date |
Mar 07, 2017 |
| Contact name |
Jocelyn Charlton |
| E-mail(s) |
jocelyn.charlton.11@ucl.ac.uk
|
| Phone |
07969338982
|
| Organization name |
University College London
|
| Department |
Institute of Child Health
|
| Street address |
30 Guilford Street
|
| City |
London |
| ZIP/Postal code |
WC1N 1EH |
| Country |
United Kingdom |
| |
|
| Platform ID |
GPL13534 |
| Series (1) |
| GSE59157 |
Methylome analysis of normal kidney, nephrogenic rest and Wilms tumor |
|
