NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM1314401 Query DataSets for GSM1314401
Status Public on Mar 01, 2014
Title C15p normal placenta tissue sample
Sample type genomic
 
Source name placenta tissue
Organism Homo sapiens
Characteristics gender: Female
birth weight-lbs: 5
tissue: normal placenta tissue
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was isolated using Qiagen QIAamp DNA Midi Kits (Qiagen, Valencia, CA) according to the manufacturerÍs instructions
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
 
Hybridization protocol Standard Illumina Protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description normal placenta tissue sample
Data processing Raw data were processed through Illumina's GenomeStudio V2011.1 Methylation Module v1.9.0 for cross array normalization and output of average Beta estimates and detection p-values
 
Submission date Jan 24, 2014
Last update date Mar 01, 2014
Contact name Connie Mulligan
E-mail(s) cmulligan@ufl.edu
Organization name University of Florida
Department Department of Anthropology
Street address 2033 Mowry Road
City Gainesville
State/province Florida
ZIP/Postal code 32610-3610
Country USA
 
Platform ID GPL13534
Series (1)
GSE54399 Stress, heritability, tissue type and human methylome variation.

Data table header descriptions
ID_REF
VALUE Average Beta
Detection Pval

Data table
ID_REF VALUE Detection Pval
cg00000029 0.10832 0
cg00000108 0.9239 0
cg00000109 0.89694 0
cg00000165 0.62614 0
cg00000236 0.78926 0
cg00000289 0.66695 0
cg00000292 0.75894 0
cg00000321 0.52798 0
cg00000363 0.23219 0
cg00000622 0.03792 0
cg00000658 0.82826 0
cg00000714 0.29369 0
cg00000721 0.8517 0
cg00000734 0.06384 0
cg00000769 0.07512 0
cg00000807 0.44711 0
cg00000884 0.69395 0
cg00000905 0.07936 0
cg00000924 0.54677 0
cg00000948 0.60154 0

Total number of rows: 485577

Table truncated, full table size 9913 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap