|
| Status |
Public on Nov 30, 2014 |
| Title |
Colon_Adenoma_5 |
| Sample type |
genomic |
| |
|
| Source name |
colon
|
| Organism |
Homo sapiens |
| Characteristics |
tissue: colon
state: cancer
phenotype: adenoma
notes: adenoma
age: 64
Sex: na
|
| Treatment protocol |
na
|
| Growth protocol |
na
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
DNeasy or Masterpure DNA extraction kit
|
| Label |
Cy5 and Cy3
|
| Label protocol |
Standard Illumina Protocol
|
| |
|
| Hybridization protocol |
Standard Illumina Protocol
|
| Scan protocol |
iScan Protocol
|
| Description |
5730504036_R02C01
Colon_Adenoma_5
|
| Data processing |
minfi package (bioconductor)
|
| |
|
| Submission date |
Dec 05, 2013 |
| Last update date |
Nov 30, 2014 |
| Contact name |
Winston Timp |
| E-mail(s) |
wtimp@jhu.edu
|
| Phone |
410-417-8467
|
| Organization name |
Johns Hopkins University
|
| Department |
Biomedical Engineering
|
| Lab |
Timp Lab
|
| Street address |
3400 N. Charles St. Clark 102A
|
| City |
Baltimore |
| State/province |
MD |
| ZIP/Postal code |
21218 |
| Country |
USA |
| |
|
| Platform ID |
GPL13534 |
| Series (1) |
| GSE53051 |
Large hypomethylated blocks related to large heterochromatin regions as a universal defining epigenetic alteration in human solid tumors |
|
