NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM1281183 Query DataSets for GSM1281183
Status Public on Nov 30, 2014
Title Pancreas_Cancer_1
Sample type genomic
 
Source name pancreas
Organism Homo sapiens
Characteristics tissue: pancreas
state: cancer
phenotype: cancer
notes: adenocarcinoma
age: na
Sex: na
Treatment protocol na
Growth protocol na
Extracted molecule genomic DNA
Extraction protocol DNeasy or Masterpure DNA extraction kit
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
 
Hybridization protocol Standard Illumina Protocol
Scan protocol iScan Protocol
Description 5730504019_R02C02
Pancreas_Cancer_1
Data processing minfi package (bioconductor)
 
Submission date Dec 05, 2013
Last update date Nov 30, 2014
Contact name Winston Timp
E-mail(s) wtimp@jhu.edu
Phone 410-417-8467
Organization name Johns Hopkins University
Department Biomedical Engineering
Lab Timp Lab
Street address 3400 N. Charles St. Clark 102A
City Baltimore
State/province MD
ZIP/Postal code 21218
Country USA
 
Platform ID GPL13534
Series (1)
GSE53051 Large hypomethylated blocks related to large heterochromatin regions as a universal defining epigenetic alteration in human solid tumors

Data table header descriptions
ID_REF
VALUE normalized Average Beta

Data table
ID_REF VALUE
cg13869341 0.863770612852471
cg14008030 0.663444256749458
cg12045430 0.141769665319379
cg20826792 0.23276207191657
cg00381604 0.0389260512877259
cg20253340 0.55109711726054
cg21870274 0.664765282684064
cg03130891 0.174656071619964
cg24335620 0.803629611088171
cg16162899 0.89748822675544
cg17149495 0.815237794080659
cg22802167 0.915345348473438
cg24669183 0.735878655601502
cg17308840 0.170496134860346
cg17866181 0.897493607794966
cg24159721 0.262666530889536
cg15174812 0.200039500442921
cg08477687 0.355634486423979
cg00034556 0.280808869961388
cg00645010 0.2701594047311

Total number of rows: 485512

Table truncated, full table size 13737 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap