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Sample GSM1278569 Query DataSets for GSM1278569
Status Public on Mar 09, 2017
Title P269
Sample type genomic
 
Source name Prostate Tumor
Organism Homo sapiens
Characteristics disease state: Tumor sample
tissue: Prostate Tumor
sample type: fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol DNA extracted by Phenol:Chloroform:Isoamylalcohol (Sigma)
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
 
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting
Description P269.betas
Data processing Genome Studio V2011.2; the 'complete_data.txt' contains unmethylated and methylated signal intensities along with average beta and Pval.
 
Submission date Dec 03, 2013
Last update date Mar 09, 2017
Contact name Manel Esteller
Organization name IDIBELL
Department PEBC
Lab Cancer Epigenetics
Street address Hospital Duran i Reynals Av. Gran Via s/n km, 2.7
City L'Hospitalet de Llobregat
State/province Barcelona
ZIP/Postal code 08908
Country Spain
 
Platform ID GPL13534
Series (1)
GSE52955 DNA Methylation Dynamics in Urological Tumors

Data table header descriptions
ID_REF
VALUE Average Beta

Data table
ID_REF VALUE
cg00000029 0.237213759381832
cg00000108 0.921517895561908
cg00000109 0.842413805984298
cg00000165 0.52910619673735
cg00000236 0.853741296865899
cg00000289 0.623962597105141
cg00000292 0.691190212148938
cg00000321 0.672985924583509
cg00000363 0.323048442510244
cg00000622 0.0139568706608025
cg00000658 0.788661598310684
cg00000714 0.170113414448326
cg00000721 0.898650323410631
cg00000734 0.100894332078074
cg00000769 0.0646266245379779
cg00000807 0.793591171040662
cg00000884 0.760401163925853
cg00000905 0.0612615835884277
cg00000924 0.544252874170992
cg00000948 0.849909246895025

Total number of rows: 485512

Table truncated, full table size 13817 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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