|
|
GEO help: Mouse over screen elements for information. |
|
Status |
Public on Aug 22, 2016 |
Title |
normal lung, formalin fixed, paraffin embedded (5770) |
Sample type |
genomic |
|
|
Source name |
normal lung, formalin fixed, paraffin embedded
|
Organism |
Homo sapiens |
Characteristics |
disease state: control tissue: lung treatment: FFPE
|
Treatment protocol |
na
|
Growth protocol |
na
|
Extracted molecule |
genomic DNA |
Extraction protocol |
genomic DNA was extracted and purified from lung tissue samples using Qiagen QIAmp Kit (Qiagen, Hilden, Germany) according to standard instructions
|
Label |
Cy5 and Cy3
|
Label protocol |
Standard Illumina Protocol
|
|
|
Hybridization protocol |
bisulphite converted DNA was amplified, fragmented and hybridized to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
|
Scan protocol |
Arrays were imaged using iScan Reader using standard recommended Illumina scanner setting
|
Description |
5770_NO_FF genomic DNA from normal lung, formalin fixed, paraffin embedded
|
Data processing |
BeadStudio software v3.2
|
|
|
Submission date |
Sep 23, 2013 |
Last update date |
Aug 22, 2016 |
Contact name |
Ole Ammerpohl |
Organization name |
UK Ulm
|
Street address |
Albert-Einstein-Allee 11
|
City |
Ulm |
ZIP/Postal code |
89081 |
Country |
Germany |
|
|
Platform ID |
GPL13534 |
Series (1) |
GSE51077 |
The tissue is the issue: Improved methylome analysis from paraffin-embedded tissues by application of the HOPE-technique |
|
Data table header descriptions |
ID_REF |
|
VALUE |
Average Beta, normalized (internal control) |
Detection Pval |
Detection p-value |
Data table |
ID_REF |
VALUE |
Detection Pval |
cg00000029 |
0.2628708 |
0 |
cg00000108 |
0.9378068 |
0 |
cg00000109 |
0.8133563 |
0 |
cg00000165 |
0.214501 |
0 |
cg00000236 |
0.8307272 |
0 |
cg00000289 |
0.5548981 |
0 |
cg00000292 |
0.6353443 |
0 |
cg00000321 |
0.2824593 |
0 |
cg00000363 |
0.2694809 |
0 |
cg00000622 |
0.01455755 |
0 |
cg00000658 |
0.7777221 |
0 |
cg00000714 |
0.1699448 |
0 |
cg00000721 |
0.9030345 |
0 |
cg00000734 |
0.07985406 |
0 |
cg00000769 |
0.08420114 |
0 |
cg00000807 |
0.7522115 |
0 |
cg00000884 |
0.8411778 |
0 |
cg00000905 |
0.08551984 |
0 |
cg00000924 |
0.4593002 |
0 |
cg00000948 |
0.8678389 |
0 |
Total number of rows: 485577
Table truncated, full table size 10975 Kbytes.
Supplementary data files not provided |
Processed data included within Sample table |
|
|
|
|
|