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Status |
Public on Mar 31, 2013 |
Title |
Mouse maxillary molar 3 |
Sample type |
RNA |
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|
Source name |
Mouse maxillary molar
|
Organism |
Mus musculus |
Characteristics |
tissue: maxillary molar age: E14.5 genetic background: C57Bl6
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Growth protocol |
Pregnant female mice (C57Bl6 genetic background) were euthanized at 14.5 days of gestation (E14.5), embryos were collected and tooth samples (lower incisors, mandibular and maxillary first molars) were microdissected
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Extracted molecule |
total RNA |
Extraction protocol |
Total RNA was extracted with the RNAeasy micro Kit (Qiagen) from pools of 4 tooth germs to obtain enough RNA for subsequent microarray hybridization.
|
Label |
biotin
|
Label protocol |
Biotinylated single strand cDNA targets were prepared, starting from 150 ng of total RNA, using the Ambion WT Expression Kit (Cat # 4411974) and the Affymetrix GeneChip® WT Terminal Labeling Kit (Cat # 900671) according to Affymetrix recommendations
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Hybridization protocol |
1.9 μg of cDNAs were hybridized for 16 hours at 45oC on GeneChip® Mouse Gene 1.0 ST arrays (Affymetrix)
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Scan protocol |
The chips were washed and stained in the GeneChip® Fluidics Station 450 (Affymetrix) and scanned with the GeneChip® Scanner 3000 7G (Affymetrix) at a resolution of 0.7 µm.
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Description |
Raw data (.CEL Intensity files) were extracted from the scanned images using the Affymetrix GeneChip® Command Console (AGCC) version 3.2.
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Data processing |
CEL files were processed with Affymetrix Expression Console software version 1.1 to calculate probe set signal intensities using Robust Multi-array Average (RMA) algorithms with default settings.
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Submission date |
Dec 26, 2012 |
Last update date |
Mar 31, 2013 |
Contact name |
Doulaye Dembele |
E-mail(s) |
doulaye@igbmc.fr
|
Phone |
+33 3 88 65 35 28
|
Organization name |
IGBMC
|
Department |
Biopuces
|
Street address |
1 rue Laurent Fries
|
City |
Illkirch |
ZIP/Postal code |
67400 |
Country |
France |
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Platform ID |
GPL6246 |
Series (1) |
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