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GEO accession:
Series GSE66834
Query DataSets for GSE66834
Status
Public on Nov 21, 2016
Title
TET proteins regulate lineage specification and TCR-mediated expansion of iNKT cells
Organism
Mus musculus
Experiment type
Expression profiling by high throughput sequencing
Methylation profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
27869820
Submission date
Mar 12, 2015
Last update date
May 15, 2019
Contact name
Sini Rautio
Organization name
Aalto University
Street address
Konemiehentie 2
City
Espoo
ZIP/Postal code
02100
Country
Finland
Platforms (1)
GPL17021
Illumina HiSeq 2500 (Mus musculus)
Samples (54)
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More...
GSM1632848
iNKT WT BR1 RNA-Seq thymic iNKT
GSM1632849
iNKT WT BR2 RNA-Seq thymic iNKT
GSM1632850
iNKT WT BR3 RNA-Seq thymic iNKT
GSM1632851
iNKT DKO BR1 RNA-Seq thymic iNKT
GSM1632852
iNKT DKO BR2 RNA-Seq thymic iNKT
GSM1632853
iNKT DKO BR3 RNA-Seq thymic iNKT
GSM1632854
iNKT WT BR1 RNA-Seq iNKT
GSM1632855
iNKT WT BR2 RNA-Seq iNKT
GSM1632856
iNKT WT BR3 RNA-Seq iNKT
GSM1632857
iNKT DKO BR1 RNA-Seq iNKT
GSM1632858
iNKT DKO BR2 RNA-Seq iNKT
GSM1632859
iNKT DKO BR3 RNA-Seq iNKT
GSM1632860
CD8 WT BR1 RNA-Seq CD8 SP
GSM1632861
CD8 WT BR2 RNA-Seq CD8 SP
GSM1632862
CD8 WT BR3 RNA-Seq CD8 SP
GSM1632863
CD8 DKO BR1 RNA-Seq CD8 SP
GSM1632864
CD8 DKO BR2 RNA-Seq CD8 SP
GSM1632865
CD8 DKO BR3 TR1 RNA-Seq CD8 SP
GSM1632866
CD8 DKO BR3 TR2 RNA-Seq CD8 SP
GSM1632867
iNKT WT BR1 CMS-Seq IP
GSM1632868
iNKT WT BR2 CMS-Seq IP
GSM1632869
iNKT WT BR1 CMS-Seq Input
GSM1632870
iNKT WT BR2 CMS-Seq Input
GSM1855585
WGBS seq WT iNKT BR1 (wt1)
GSM1855586
WGBS seq WT iNKT BR2 (wt2)
GSM1855587
WGBS seq Tet2/3 DKO iNKT BR1 young (dkoy1)
GSM1855588
WGBS seq Tet2/3 DKO iNKT BR2 young (dkoy2)
GSM2281118
SMART seq WT iNKT BR1
GSM2281119
SMART seq WT iNKT BR2
GSM2281120
SMART seq Tet3 KO iNKT BR1
GSM2281121
SMART seq Tet3 KO iNKT BR2
GSM2281122
SMART seq Tet2/3 DKO iNKT BR1 young
GSM2281123
SMART seq Tet2/3 DKO iNKT BR2 young
GSM2281124
SMART seq WT iNKT stage 0 BR1
GSM2281125
SMART seq WT iNKT stage 0 BR2
GSM2281126
SMART seq Tet2/3 DKO iNKT stage 0 BR1
GSM2281127
SMART seq Tet2/3 DKO iNKT stage 0 BR2
GSM2281128
SMART seq WT iNKT tetramer+TCRb+CD24-NK1.1- BR1
GSM2281129
SMART seq WT iNKT tetramer+TCRb+CD24-NK1.1- BR2
GSM2281130
SMART seq WT iNKT tetramer+TCRb+CD24-NK1.1- BR3
GSM2281131
SMART seq Tet2/3 DKO iNKT tetramer+TCRb+CD24-NK1.1- BR1
GSM2281132
SMART seq Tet2/3 DKO iNKT tetramer+TCRb+CD24-NK1.1- BR2
GSM2281133
SMART seq Tet2/3 DKO iNKT tetramer+TCRb+CD24-NK1.1- BR3
GSM2281134
SMART seq WT NKT1 BR1
GSM2281136
SMART seq WT NKT1 BR2
GSM2281139
SMART seq Tet2/3 DKO NKT1 BR1
GSM2281140
SMART seq Tet2/3 DKO NKT1 BR2
GSM2281141
SMART seq Tet2/3 DKO NKT1 BR3
GSM2283399
ATAC seq WT iNKT BR1
GSM2283400
ATAC seq WT iNKT BR2
GSM2283401
ATAC seq WT iNKT BR3
GSM2283402
ATAC seq Te2/3 DKO iNKT BR1 young
GSM2283403
ATAC seq Te2/3 DKO iNKT BR2 young
GSM2283404
ATAC seq Te2/3 DKO iNKT BR3 young
This SuperSeries is composed of the following SubSeries:
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More...
GSE66832
TET proteins regulate lineage specification and TCR-mediated expansion of iNKT cells (RNA-Seq)
GSE66833
TET proteins regulate lineage specification and TCR-mediated expansion of iNKT cells (CMS-Seq)
GSE72116
TET proteins regulate lineage specification and TCR-mediated expansion of iNKT cells (WGBS)
GSE85674
TET proteins regulate lineage specification and TCR-mediated expansion of iNKT cells (SMART-Seq)
GSE85743
TET proteins regulate lineage specification and TCR-mediated expansion of iNKT cells (ATAC-Seq)
Relations
BioProject
PRJNA282750
Download family
Format
SOFT formatted family file(s)
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Series Matrix File(s)
TXT
Supplementary file
Size
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File type/resource
GSE66834_RAW.tar
7.8 Mb
(http)
(custom)
TAR (of TXT)
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