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| Status |
Public on Nov 01, 2014 |
| Title |
Genome-wide copy number and allele-specific copy number analysis of choroid plexus tumors (II) |
| Organism |
Homo sapiens |
| Experiment type |
Genome variation profiling by SNP array
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| Summary |
Copy number analysis was performed using genotyping microarrays for 20 choroid plexus tumors. Genomic aberrations were investigated by tumor histological classification and the pattern observed in each subgroup was further refined. Allele-specific copy number analysis also allowed us to identify regions of acquired uniparental disomy with neutral copy number values.
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| Overall design |
Twenty choroid plexus tumors (15 choroid plexus carcinomas, 3 choroid plexus papillomas, 2 atypical choroid plexus papillomas) were used in this study. No replicates were included.
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| Contributor(s) |
Merino DM, Shlien A, Villani A, Pienkowska M, Mack SC, Ramaswamy V, Shih DJ, Tatevossian R, Novokmet A, Choufani S, Dvir R, Ben-Arush M, Harris BT, Hwang EI, Lulla RR, Pfister SM, Achatz MI, Jabado N, Finlay JL, Weksberg R, Hawkins C, Taylor MD, Tabori U, Ellison DW, Gilbertson RJ, Malkin D |
| Citation(s) |
25336695 |
| Submission date |
Sep 11, 2014 |
| Last update date |
Feb 02, 2015 |
| Contact name |
Diana M Merino |
| E-mail(s) |
diana.merino@utoronto.ca
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| Organization name |
The Hospital for Sick Children
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| Department |
Genetics and Genome Biology
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| Lab |
Malkin
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| Street address |
686 Bay St.
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| City |
Toronto |
| State/province |
Ontario |
| ZIP/Postal code |
M5V0A4 |
| Country |
Canada |
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| Platforms (1) |
| GPL15793 |
Affymetrix OncoScan™ FFPE Express V2 334K |
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| Samples (20)
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| GSM1502995 |
CPC, CP147-TA |
| GSM1502996 |
CPC, CP147-TD |
| GSM1502997 |
CPC, CP150-TB |
| GSM1502998 |
CPC, CP153-T |
| GSM1502999 |
CPC, CP157-T |
| GSM1503000 |
CPC, CP158-T |
| GSM1503001 |
CPC, CP2-T |
| GSM1503002 |
CPC, CP22-TA |
| GSM1503003 |
CPC, CP22-TB |
| GSM1503004 |
CPC, CP39-T |
| GSM1503005 |
CPC, CP5-TC |
| GSM1503006 |
CPC, CP58-T |
| GSM1503007 |
CPC, CP6-T |
| GSM1503008 |
CPC, CP64-T |
| GSM1503009 |
CPP, CP120-T |
| GSM1503010 |
CPP, CP125-T |
| GSM1503011 |
CPP, CP152-T |
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| This SubSeries is part of SuperSeries: |
| GSE60886 |
Molecular characterization of choroid plexus tumors reveals novel clinically relevant subgroups |
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| Relations |
| BioProject |
PRJNA260859 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE61363_OncoScan-SegmentationData.txt.gz |
248.5 Kb |
(ftp)(http) |
TXT |
| GSE61363_RAW.tar |
274.1 Mb |
(http)(custom) |
TAR (of CEL, TXT) |
| Processed data provided as supplementary file |
| Processed data are available on Series record |
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