 |
 |
GEO help: Mouse over screen elements for information. |
|
| Status |
Public on Nov 11, 2010 |
| Title |
A genomic approach highlights common and diverse effects and determinants of susceptibility on the yeast Saccharomyces cerevisiae exposed to distinct antimicrobial peptides |
| Organism |
Saccharomyces cerevisiae |
| Experiment type |
Expression profiling by array
|
| Summary |
The mechanism of action of antimicrobial peptides (AMPs) was initially correlated with peptide membrane permeation properties. However, recent evidences indicate that action of a number of AMPs is more complex and involves specific interactions at cell envelopes or with intracellular targets. In this study, a genomic approach was undertaken on the model yeast Saccharomyces cerevisiae to characterize the antifungal effect of two unrelated AMPs.
Two differentiated peptides were used: the synthetic cell-penetrating PAF26 and the natural cytolytic melittin. Transcriptomic analyses demonstrated distinctive gene expression changes for each peptide. Quantitative RT-PCR confirmed differential expression of selected genes. Gene onthology (GO) annotation of differential gene lists showed that the unique significant terms shared by treatment with both peptides were related to the cell wall (CW). Assays with mutants lacking CW related genes, including those of MAPK signaling pathways, revealed genes having influence on sensitivity to peptides. Fluorescence microscopy and flow cytometry demonstrated PAF26 interaction with cells and internalization that correlated with cell killing in sensitive CW-defective mutants such as ∆ecm33 or ∆ssd1. GO annotation also showed differential responses between peptides, which included ribosomal biogenesis, ARG genes from the metabolism of amino groups (specifically induced by PAF26), or the reaction to unfolded protein stress. Susceptibility of deletion mutants confirmed the involvement of these processes. Specifically, mutants lacking ARG genes from the metabolism of arginine pathway were markedly more resistant to PAF26 and had a functional CW. In the deletant in the arginosuccinate synthetase (ARG1) gene, PAF26 interaction occurred normally, thus uncoupling peptide interaction from cell killing. The previously described involvement of the glycosphingolipid gene IPT1 was extended to the peptides studied here.
Reinforcement of CW is a general response common after exposure to distinct AMPs, and likely contributes to shield cells from peptide interaction. However, a weakened CW is not necessarily indicative of a higher sensitivity to AMPs. Additional processes modulate susceptibility to specific peptides, exemplified in the involvement of the metabolism of amino groups in the case of PAF26. The relevance of the response to unfolded protein stress or the sphingolipid biosynthesis, previously reported for other unrelated AMPs, was also independently confirmed.
|
| |
|
| Overall design |
We carried out the characterization of the transcriptome of S. cerevisiae after exposure to PAF26 and melittin peptides. The global transcriptome response to peptides was undertaken by treating S. cerevisiae FY1679 cells in the logarithmic growth phase to sub-lethal concentrations (5 µM) of either PAF26 (PAF samples) or melittin (MEL samples) for 3 hours. Control treatment (CTR samples) consisted in cells exposed to buffer in the absence of peptide. Three biological replicates were conducted for each treatment. DNA macroarrays representing 6,020 yeast genes were hybridized with labelled cDNAs from cells.
|
| |
|
| Contributor(s) |
Gandía M, Marcos JF |
| Citation(s) |
21078184 |
| Submission date |
Nov 10, 2010 |
| Last update date |
Dec 15, 2014 |
| Contact name |
MONICA GANDIA |
| E-mail(s) |
mgandia@iata.csic.es
|
| Organization name |
IATA
|
| Department |
CIENCIA DE LOS ALIMENTOS
|
| Lab |
FISIOLOGÍA Y BIOTECNOLOGÍA POSTCOSECHA
|
| Street address |
AVDA. AGUSTIN ESCARDINO 7
|
| City |
PATERNA |
| State/province |
VALENCIA |
| ZIP/Postal code |
46980 |
| Country |
Spain |
| |
|
| Platforms (1) |
|
| Samples (9)
|
| GSM622034 |
Sample exposed to PAF26, replicate 1 |
| GSM622035 |
Sample exposed to PAF26, replicate 2 |
| GSM622036 |
Sample exposed to PAF26, replicate 3 |
| GSM622037 |
Sample exposed to melittin, replicate 1 |
| GSM622038 |
Sample exposed to melittin, replicate 2 |
| GSM622039 |
Sample exposed to melittin, replicate 3 |
|
| Relations |
| BioProject |
PRJNA134819 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE25279_RAW.tar |
570.0 Kb |
(http)(custom) |
TAR (of TXT) |
| GSE25279_readme.txt |
527 b |
(ftp)(http) |
TXT |
| Processed data included within Sample table |
|
|
|
|
 |
Less...
More...