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Status
Public on Nov 18, 2006
Title
Valencia yeast v4
Technology type
spotted DNA/cDNA
Distribution
non-commercial
Organism
Saccharomyces cerevisiae Manufacturer
Seccion de Chips de DNA-SCSIE (University of Valencia)
Manufacture protocol
See Alberola et al. (2004), International Microbiology 7:199-206
Support
nylon
Description
Nylon macroarray (7 x 11 cm) with 6019 single spotted yeast ORF probes. Probes are PCR fragments comprising the whole ORF (5568 cases) or a 1000 bp-fragment from the ORF 3' end (451 cases).
Web link
http://scsie.uv.es/chipsdna Contributor(s)
Perez-Ortin JE , Garcia-Martinez J Citation(s)
15492934 Submission date
Nov 16, 2006
Last update date
Dec 15, 2014
Contact name
Jose E. Perez-Ortin
E-mail(s)
jose.e.perez@uv.es Phone
34 963 543467
Organization name
Universitat de Valencia
Department
Bioquimica y Biologia Molecular
Lab
Yeast Functional Genomics (GFL)
Street address
Dr. Moliner 50
City
Burjassot
State/province
Valencia
ZIP/Postal code
E46100
Country
Spain
Samples (166)
GSM147110 , GSM147112 , GSM147113 , GSM147114 , GSM147115 , GSM147116
GSM147117 ,
GSM147118 ,
GSM147119 ,
GSM243644 ,
GSM243645 ,
GSM243646 ,
GSM243647 ,
GSM243648 ,
GSM243649 ,
GSM243922 ,
GSM243923 ,
GSM243924 ,
GSM243925 ,
GSM243926 ,
GSM243927 ,
GSM243928 ,
GSM243929 ,
GSM243930 ,
GSM243931 ,
GSM243932 ,
GSM243933 ,
GSM243934 ,
GSM243935 ,
GSM243936 ,
GSM243937 ,
GSM243938 ,
GSM243939 ,
GSM244162 ,
GSM244163 ,
GSM244164 ,
GSM244165 ,
GSM244166 ,
GSM244168 ,
GSM244170 ,
GSM244171 ,
GSM244172 ,
GSM244174 ,
GSM244175 ,
GSM244178 ,
GSM244179 ,
GSM244185 ,
GSM244188 ,
GSM244191 ,
GSM244194 ,
GSM244197 ,
GSM318690 ,
GSM327748 ,
GSM327749 ,
GSM327750 ,
GSM327751 ,
GSM327752 ,
GSM327753 ,
GSM327754 ,
GSM327755 ,
GSM327756 ,
GSM327757 ,
GSM327758 ,
GSM327759 ,
GSM327760 ,
GSM327761 ,
GSM327762 ,
GSM327763 ,
GSM327764 ,
GSM327765 ,
GSM327766 ,
GSM327767 ,
GSM327768 ,
GSM327769 ,
GSM327770 ,
GSM327771 ,
GSM327772 ,
GSM327773 ,
GSM327774 ,
GSM327775 ,
GSM327776 ,
GSM327777 ,
GSM327778 ,
GSM327779 ,
GSM327780 ,
GSM327781 ,
GSM327782 ,
GSM327783 ,
GSM327784 ,
GSM327785 ,
GSM327786 ,
GSM327787 ,
GSM327788 ,
GSM327789 ,
GSM327790 ,
GSM327791 ,
GSM327792 ,
GSM327793 ,
GSM327794 ,
GSM327795 ,
GSM327796 ,
GSM327797 ,
GSM327798 ,
GSM327799 ,
GSM327800 ,
GSM327801 ,
GSM327802 ,
GSM327803 ,
GSM327804 ,
GSM327805 ,
GSM327806 ,
GSM327807 ,
GSM327808 ,
GSM327809 ,
GSM327810 ,
GSM327811 ,
GSM327812 ,
GSM327813 ,
GSM327814 ,
GSM327815 ,
GSM327816 ,
GSM327817 ,
GSM327818 ,
GSM327819 ,
GSM327820 ,
GSM327821 ,
GSM327822 ,
GSM327823 ,
GSM327824 ,
GSM327825 ,
GSM327826 ,
GSM327827 ,
GSM327828 ,
GSM327829 ,
GSM327830 ,
GSM327831 ,
GSM327834 ,
GSM327835 ,
GSM327836 ,
GSM327837 ,
GSM327838 ,
GSM327839 ,
GSM327840 ,
GSM327841 ,
GSM327842 ,
GSM327843 ,
GSM327844 ,
GSM327845 ,
GSM327846 ,
GSM432507 ,
GSM432932 ,
GSM432948 ,
GSM432949 ,
GSM432951 ,
GSM432953 ,
GSM622031 ,
GSM622032 ,
GSM622033 ,
GSM622034 ,
GSM622035 ,
GSM622036 ,
GSM622037 ,
GSM622038 ,
GSM622039 ,
GSM1558243 ,
GSM1558244 Series (11)
GSE13096 Transcription rate analysis of wild type strain subjected to osmotic stress
GSE13097 mRNA amount analysis of wild type strain subjected to osmotic stress
GSE13098 Transcription rate analysis of W303 hog1 mutant strain subjected to osmotic stress
GSE13099 mRNA amount analysis of W303 hog1 mutant strain subjected to osmotic stress
GSE13100 Osmotic stress on yeast S. cerevisiae
GSE17303 Transcriptional effects of the IWR1 deletion
GSE25279 A genomic approach highlights common and diverse effects and determinants of susceptibility on the yeast Saccharomyces cerevisiae exposed to distinct antimicrobial peptides
GSE63769 Genomic Run On (GRO): determination of the nascent transcriptional rates and mRNA levels in several yeast mutants (SAC3, SUS1, SRC1)
Data table header descriptions ID Probe Length All gene probes have common oligonucleotide ends
ORF Systematic ORF name
SPOT_ID Other spot identifier
Gene name Standard SGD name
CLONE ID Molecular function Biological Process
Data table ID Probe Length ORF SPOT_ID Gene name CLONE ID Molecular function Biological Process R1 - C1 : 1
402
25S rDNA
R1 - C1 : 10
297
YBL091C-A unknown
unknown
R1 - C1 : 11
195
YCR102W-A unknown
unknown
R1 - C1 : 12
258
YDL130W-A STF1
unknown
ATP synthesis coupled proton transport
R1 - C1 : 13
441
tRNA-Y DNA
tRNA-Tyr
transfer RNA
R1 - C1 : 14
153
YDR034W-B unknown
unknown
R1 - C1 : 15
267
YDR363W-A SEM1
unknown
filamentous growth, exocytosis, regulation of cell cycle
R1 - C1 : 16
496
18S rDNA
R1 - C1 : 2
237
YDR525W-A SNA2
unknown
unknown
R1 - C1 : 3
920
YAL025C MAK16
unknown
ribosomal large subunit biogenesis virus-host interaction
R1 - C1 : 4
1553
YAL022C FUN26
nucleoside transporter nucleoside transport
nucleoside transport
R1 - C1 : 5
282
YER048W-A unknown
unknown
R1 - C1 : 6
219
YER091C-A unknown
unknown
R1 - C1 : 7
243
YIR020W-B unknown
unknown
R1 - C1 : 8
1421
YKL221W MCH2
NOT a monocarboxylic acid transporter, transporter
transport
R1 - C1 : 9
261
YKL053C-A MDM35
unknown
* mitochondrion organization and biogenesis
R1 - C10 : 1
650
YGL037C PNC1
nicotinamidase
chromatin silencing at ribosomal DNA (rDNA), chromatin silencing at telomere, nicotinate nucleotide biosynthesis, salvage pathway
R1 - C10 : 10
832
YNL162W RPL42A
* structural constituent of ribosome
protein biosynthesis
R1 - C10 : 11
306
YDR139C RUB1
* protein tagging
RUB1-dependent protein catabolism
R1 - C10 : 12
647
YDR177W UBC1
ubiquitin conjugating enzyme
* endocytosis, * germination (sensu Saccharomyces), protein monoubiquitination, protein polyubiquitination
6144 538 Kbytes .Supplementary data files not provided
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