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Series GSE10204 Query DataSets for GSE10204
Status Public on Jan 01, 2009
Title Gene expression data from Muscle Longissimus dorsi sample of F2 animals
Organism Sus scrofa
Experiment type Expression profiling by array
Summary In this study, we used correlation analysis of the expression profiles and drip loss to produce a list of functional candidate genes under the assumption that genes with strong correlation between their expression values and drip belong to pathways or networks relevant for the control of the trait.
Expression QTL analyses for transcripts showing trait dependent expression were done in order to identify genes which show trait associated expression, map to pQTL regions, and exhibit cis regulation.
Keywords: Corrrelation and association
 
Overall design 74 F2 animals of a resource population based on the breeds Duroc and Pietrain known to differ in meat quality and quantity traits were hybridized to Affymetrix Porcine Genome Arrays.
 
Contributor(s) Ponsuksili S, Wimmers K
Citation(s) 18671879
Submission date Jan 18, 2008
Last update date May 03, 2013
Contact name Klaus Wimmers
E-mail(s) s.wimmers@fbn-dummerstorf.de
Phone 0049 3820868700
Organization name Leibniz Institute for Farm Animal Biology (FBN)
Street address Wilhelm-Stahl-Allee 2
City Dummerstorf
ZIP/Postal code 18196
Country Germany
 
Platforms (1)
GPL3533 [Porcine] Affymetrix Porcine Genome Array
Samples (74)
GSM257695 DRIP 1_muscle taken at slaughter, mean end weight of 110 kg
GSM257696 DRIP 9_muscle taken at slaughter, mean end weight of 110 kg
GSM257697 DRIP 10_muscle taken at slaughter, mean end weight of 110 kg
Relations
BioProject PRJNA108323

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE10204_RAW.tar 142.4 Mb (http)(custom) TAR (of CEL)
Processed data included within Sample table
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