GEO help: Mouse over screen elements for information.
Status
Public on Mar 23, 2004
Title
Human Promotor Array, v11
Technology type
spotted DNA/cDNA
Distribution
non-commercial
Organism
Homo sapiens
Description
Human promoter array. Human promoter sequences (1000bp upstream and 500bp downstream from transcription initiation site) were retrieved batch-wise from GoldenPath. PCR primers were selected using an improved version of Primer3 running in-house on a 24 node Linux cluster. Promoter fragments with an average length of 1.2 kb were amplified, purified and spotted onto UltraGAPS coated slides (Corning Incorporated, Corning, NY) in the presence of 50% DMSO. A promoter microarray containing triplicate spots of 3083 promoter sequences and 787 non-promoter controls and 192 non-human controls. Many of the promoters on the array are from genes of particular relevance to cancer and the array includes promoters from most of the genes that are known to be regulated by methylation in cancer.
Contributor(s)
Wang Y , McClelland M Submission date
Dec 30, 2003
Last update date
Jan 17, 2013
Contact name
Yipeng Wang
E-mail(s)
ywang@sdibr.org Phone
8585813960
Organization name
Vaccine Research Institute of San Diego
Street address
City
San Diego
State/province
CA
ZIP/Postal code
92121
Country
USA
Samples (36)
GSM14624 , GSM14625 , GSM14626 , GSM14627 , GSM19040 , GSM19041
GSM19042 ,
GSM19043 ,
GSM31617 ,
GSM31618 ,
GSM31619 ,
GSM31620 ,
GSM31621 ,
GSM31622 ,
GSM31631 ,
GSM31632 ,
GSM31633 ,
GSM31634 ,
GSM31635 ,
GSM31636 ,
GSM31637 ,
GSM31638 ,
GSM31639 ,
GSM31640 ,
GSM31641 ,
GSM31642 ,
GSM31643 ,
GSM31644 ,
GSM31645 ,
GSM31646 ,
GSM31647 ,
GSM31648 ,
GSM31649 ,
GSM31650 ,
GSM31651 ,
GSM31652 Series (2)
GSE951 267B1, PC3M, LNCaP Methylation Profile vs. mRNA Expression Level
GSE1810 CHIP Analysis - c-Jun/ATF2
Data table header descriptions ID GB_ACC RefSeq accession number
UNIQUE_ID unique identifier
GENE_ID gene identifier
UNIGENE UniGene identifier
SPOT_ID spot identifier
GENE_SYMBOL gene symbol
GENE_FULL_NAME gene full name
Data table ID GB_ACC UNIQUE_ID GENE_ID UNIGENE SPOT_ID GENE_SYMBOL GENE_FULL_NAME 1
NM_002151 NY013
NM_002151
promoter of NM_002151
HPN
hepsin (transmembrane protease, serine 1)
2
NM_023009 NY015
NM_023009
promoter of NM_023009
MLP
MARCKS-like protein
3
NM_004202 NY017
NM_004202
promoter of NM_004202
TMSB4Y
thymosin, beta 4, Y chromosome
4
NM_000657 NY019
NM_000657
promoter of NM_000657
BCL2
B-cell lymphoma protein 2 beta
5
NM_005343 NY021
NM_005343
promoter of NM_005343
HRAS
v-Ha-ras Harvey rat sarcoma viral oncogene homolog
6
NM_002467 NY023
NM_002467
promoter of NM_002467
MYC
v-myc myelocytomatosis viral oncogene homolog
7
NM_007182 NY037
NM_007182
promoter of NM_007182
RASSF1
Ras association domain family 1 isoform A
8
NM_000038 NY039
NM_000038
promoter of NM_000038
APC
adenomatosis polyposis coli
9
NM_002012 NY041
NM_002012
promoter of NM_002012
FHIT
fragile histidine triad gene
10
NM_000551 NY043
NM_000551
promoter of NM_000551
VHL
elogin binding protein
11
NM_004678 NY045
NM_004678
promoter of NM_004678
VCY2
variable charge, Y chromosome, 2 protein
12
NM_000610 NY047
NM_000610
promoter of NM_000610
CD44
CD44 antigen (homing function and Indian blood group system)
13
NY056
Promoter_N
Promoter_N
14
NY058
Promoter_N
Promoter_N
15
NY060
Promoter_N
Promoter_N
16
NY062
Promoter_N
Promoter_N
17
NY064
Promoter_N
Promoter_N
18
NY066
Promoter_N
Promoter_N
19
NY080
Promoter_N
Promoter_N
20
NY082
Promoter_N
Promoter_N
17328 1237 Kbytes .Supplementary data files not provided
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