GEO help: Mouse over screen elements for information.
Status
Public on Jun 08, 2007
Title
AECOM 32K MOUSE OLIGONUCLEOTIDE ARRAY, MO2 printing series
Technology type
spotted oligonucleotide
Distribution
non-commercial
Organism
Mus musculus Manufacturer
Microarray Facility of the Albert Einstein College of Medicine of Yeshiva University
Manufacture protocol
The arrays are printed with 31,769 70mer probes Qiagen V3.0 oligo set (http://oligos.qiagen.com/arrays/oligosets_mouse.php ) plus controls. Each slide is composed of 48 blocks, arranged in 4 columns and 12 rows, each block containing 700 spots in staggered pattern in 28 columns and 25 rows. The arrays are printed under rigorous clean-room conditions and quality control is employed all along the way.
Support
glass
Coating
aminosilane
Web link
http://microarray1k.aecom.yu.edu Contributor(s)
Massimi AB Submission date
Jun 08, 2007
Last update date
Jun 14, 2007
Contact name
Dumitru Andrei Iacobas
E-mail(s)
daiacobas@pvamu.edu Phone
936-261-9926
Organization name
Prairie View A&M University
Department
Center for Computational Systems Biology
Lab
Personalized Genomics
Street address
Ann Preston St
City
Prairie View
State/province
TX
ZIP/Postal code
77446
Country
USA
Samples (40)
GSM200839 , GSM200840 , GSM200841 , GSM200842 , GSM200843 , GSM200844
GSM200845 ,
GSM200854 ,
GSM200855 ,
GSM200960 ,
GSM202233 ,
GSM202235 ,
GSM202239 ,
GSM202242 ,
GSM433543 ,
GSM433544 ,
GSM433545 ,
GSM433546 ,
GSM433547 ,
GSM433548 ,
GSM433549 ,
GSM433550 ,
GSM464361 ,
GSM464362 ,
GSM464404 ,
GSM464405 ,
GSM464406 ,
GSM464407 ,
GSM464408 ,
GSM464409 ,
GSM593015 ,
GSM593016 ,
GSM593017 ,
GSM593018 ,
GSM593019 ,
GSM593020 ,
GSM738113 ,
GSM738114 ,
GSM738115 ,
GSM738116 Series (6)
GSE8105 Gap junction and purinergic P2 receptor proteins as a functional unit: insights from transcriptomics
GSE8168 “Compensatory” transcriptional mechanisms: Comparison of transcriptomes of Cx43 null and knockdown astrocytes
GSE17330 Transcriptomic alterations in Trypanosoma cruzi-infected cardiac myocytes
GSE18703 Cardiac gene expression and systemic cytokine profile are complementary in a murine model of post ischemic heart failure
GSE24086 Alterations in the Brain Transcriptome in Plasmodium Berghei ANKA Infected Mice
GSE29769 Functional and Transcriptomic Recovery of Infarcted Mouse Myocardium Treated with Bone Marrow Mononuclear Cells
Data table header descriptions ID Block set of spots printed by the same pen. The array contains 48 blocks
Column column # within block (from 1 to 28)
Row row # within block (from 1 to 25)
Oligo ID Qiagen clone ID
GB_LIST GenBank accession number of sequence used to design oligonucleotide probe
Name clone description
Symbol gene symbol
CLONE_ID ORF SPOT_ID alternative identifier
Data table ID Block Column Row Oligo ID GB_LIST Name Symbol CLONE_ID ORF SPOT_ID 1
1
1
1
M2NC000006
Randomized negative control
--CONTROL
2
1
2
1
M300021756
--UNKNOWN
3
1
3
1
M300020724
--UNKNOWN
4
1
4
1
M300019694
--UNKNOWN
5
1
5
1
M300018410
NM_016694 PARKIN. [Source:RefSeq;Acc:NM_016694]
Park2
Park2 6
1
6
1
M300017390
--UNKNOWN
7
1
7
1
M300016359
--UNKNOWN
8
1
8
1
M300015333
--UNKNOWN
9
1
9
1
M300014285
--UNKNOWN
10
1
10
1
M300013355
NM_016861 PDZ AND LIM DOMAIN PROTEIN 1 (LIM DOMAIN PROTEIN CLP-36) (C-TERMINAL LIM DOMAIN PROTEIN 1) (ELFIN). [Source:SWISSPROT;Acc:O70400]
Pdlim1
Pdlim1 11
1
11
1
M200014344
NM_025620 2210417D09Rik 12
1
12
1
M300011665
--UNKNOWN
13
1
13
1
M300010591
--UNKNOWN
14
1
14
1
M300009733
--UNKNOWN
15
1
15
1
M300008839
NM_008662 MYOSIN VI. [Source:SWISSPROT;Acc:Q64331]
Myo6
Myo6 16
1
16
1
M200015997
NM_023292 PSEUDOURIDINE SYNTHASE 3. [Source:RefSeq;Acc:NM_023292]
2610020J05Rik 17
1
17
1
M200011733
NM_025330 0610039E24Rik 18
1
18
1
M200008345
1200009A02Rik 19
1
19
1
M300006090
KINESIN SUPERFAMILY PROTEIN 24 (FRAGMENT). [Source:SPTREMBL;Acc:Q99PT7]
Kif24
Kif24 20
1
20
1
M200000247
NM_007466 APOPTOSIS INHIBITOR 5; BACULOVIRAL IAP REPEAT-CONTAINING 5; APOPTOSIS INHIBITORY PROTEIN 5. [Source:RefSeq;Acc:NM_007466]
Api5
Api5
33600 2840 Kbytes .Supplementary data files not provided
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