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Platform GPL18047

Query DataSets for GPL18047

Status

Public on Dec 11, 2013

Title

Agilent-027346 human hg18 promoters 180K

Technology type

in situ oligonucleotide

Distribution

custom-commercial

Organism

Homo sapiens

Manufacturer

Agilent Technologies

Manufacture protocol

see manufacturer's web site at http://www.agilent.com/

Description

Arrays of this design have barcodes that begin with 16027346 or 2527346.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

Submission date

Dec 10, 2013

Last update date

Dec 11, 2013

Contact name

Moshe Szyf

E-mail(s)

moshe.szyf@mcgill.ca

Organization name

McGill University

Department

Pharmacology

Street address

McIntyre Medical Building, 3655 Promenade Sir William Osler, Room 1309

City

Montreal

State/province

Quebec

ZIP/Postal code

H3G 1Y6

Country

Canada

Samples (38)

More...

GSM1286188, GSM1286189, GSM1286190, GSM1286191, GSM1286192, GSM1286193

Series (2)

GSE53192	DNA Methylation Signature of Childhood Chronic Physical Aggression in T Cells of Both Men and Women (Agilent)
GSE53193	DNA Methylation Signature of Childhood Chronic Physical Aggression in T Cells of Both Men and Women

Data table header descriptions
ID	Agilent feature number
COL	Column
ROW	Row
SPOT_ID	Spot identifier
CONTROL_TYPE	Control type
RANGE_GB
RANGE_START
RANGE_END
SEQUENCE

Data table
ID	COL	ROW	SPOT_ID	CONTROL_TYPE	RANGE_GB	RANGE_START	RANGE_END	SEQUENCE
1	532	340	HsCGHBrightCorner	pos
2	532	338	DarkCorner2	pos
3	532	336	DarkCorner2	pos
4	532	334	DarkCorner2	pos
5	532	332	DarkCorner2	pos
6	532	330	DarkCorner2	pos
7	532	328	DarkCorner2	pos
8	532	326	DarkCorner2	pos
9	532	324	DarkCorner2	pos
10	532	322	DarkCorner2	pos
11	532	320	DarkCorner2	pos
12	532	318	DarkCorner2	pos
13	532	316	DarkCorner2	pos
14	532	314	DarkCorner2	pos
15	532	312	DarkCorner2	pos
16	532	310	DarkCorner2	pos
17	532	308	DarkCorner2	pos
18	532	306	DarkCorner2	pos
19	532	304	DarkCorner2	pos
20	532	302	DarkCorner2	pos

Total number of rows: 180880

Table truncated, full table size 23035 Kbytes.

Download family	Format
SOFT formatted family file(s)	SOFT
MINiML formatted family file(s)	MINiML

Supplementary file	Size	Download	File type/resource
GPL18047_human_promoters_180K_027346_D_GEO_20100221.txt.gz	2.6 Mb	(ftp)(http)	TXT