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ATXN2 ataxin 2 [ Equus caballus (horse) ]

Gene ID: 100057794, updated on 8-Mar-2024

Summary

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Official Symbol
ATXN2provided by VGNC
Official Full Name
ataxin 2provided by VGNC
Primary source
VGNC:VGNC:15694
See related
Ensembl:ENSECAG00000014347
Gene type
protein coding
RefSeq status
MODEL
Organism
Equus caballus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 8
Exon count:
25
Annotation release Status Assembly Chr Location
103 current EquCab3.0 (GCF_002863925.1) 8 NC_009151.3 (23039843..23158176)
102 previous assembly EquCab2.0 (GCF_000002305.2) 8 NC_009151.2 (20620317..20706274)

Chromosome 8 - NC_009151.3Genomic Context describing neighboring genes Neighboring gene BRCA1 associated protein Neighboring gene uncharacterized LOC102150066 Neighboring gene uncharacterized LOC111774652 Neighboring gene SH2B adaptor protein 3 Neighboring gene uncharacterized LOC111774651 Neighboring gene uncharacterized LOC111774650

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in stress granule assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasmic stress granule IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ataxin-2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Equus caballus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EquCab3.0 Primary Assembly

Genomic

  1. NC_009151.3 Reference EquCab3.0 Primary Assembly

    Range
    23039843..23158176
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023647148.1 → XP_023502916.1  ataxin-2 isoform X6

    UniProtKB/TrEMBL
    A0A9L0T7F2
    Related
    ENSECAP00000026122.3, ENSECAT00000051211.3
    Conserved Domains (4) summary
    pfam07145
    Location:904 → 920
    PAM2; Ataxin-2 C-terminal region
    pfam06741
    Location:404 → 465
    LsmAD; LsmAD domain
    pfam14438
    Location:263 → 336
    SM-ATX; Ataxin 2 SM domain
    cl26464
    Location:924 → 1240
    Atrophin-1; Atrophin-1 family

  2. XM_023647143.1 → XP_023502911.1  ataxin-2 isoform X1

    UniProtKB/TrEMBL
    A0A9L0T7F2
    Conserved Domains (4) summary
    pfam06741
    Location:154 → 215
    LsmAD; LsmAD domain
    pfam14438
    Location:13 → 86
    SM-ATX; Ataxin 2 SM domain
    cl25764
    Location:765 → 1026
    PAT1; Topoisomerase II-associated protein PAT1
    cl25887
    Location:655 → 813
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]

  3. XM_023647144.1 → XP_023502912.1  ataxin-2 isoform X2

    UniProtKB/TrEMBL
    A0A9L0T7F2
    Conserved Domains (4) summary
    pfam07145
    Location:654 → 670
    PAM2; Ataxin-2 C-terminal region
    pfam06741
    Location:154 → 215
    LsmAD; LsmAD domain
    pfam14438
    Location:13 → 86
    SM-ATX; Ataxin 2 SM domain
    cl26464
    Location:674 → 969
    Atrophin-1; Atrophin-1 family

  4. XM_023647146.1 → XP_023502914.1  ataxin-2 isoform X4

    UniProtKB/TrEMBL
    A0A9L0T7F2
    Conserved Domains (4) summary
    pfam07145
    Location:654 → 670
    PAM2; Ataxin-2 C-terminal region
    pfam06741
    Location:154 → 215
    LsmAD; LsmAD domain
    pfam14438
    Location:13 → 86
    SM-ATX; Ataxin 2 SM domain
    cl26464
    Location:674 → 958
    Atrophin-1; Atrophin-1 family

  5. XM_023647145.1 → XP_023502913.1  ataxin-2 isoform X3

    UniProtKB/TrEMBL
    A0A9L0T7F2
    Related
    ENSECAP00000012492.3, ENSECAT00000015533.4
    Conserved Domains (5) summary
    PHA03247
    Location:674 → 1018
    PHA03247; large tegument protein UL36; Provisional
    COG5180
    Location:99 → 244
    PBP1; PAB1-binding protein PBP1, interacts with poly(A)-binding protein [RNA processing and modification]
    pfam06741
    Location:154 → 215
    LsmAD; LsmAD domain
    pfam07145
    Location:656 → 670
    PAM2; Ataxin-2 C-terminal region
    pfam14438
    Location:13 → 86
    SM-ATX; Ataxin 2 SM domain

  6. XM_023647147.1 → XP_023502915.1  ataxin-2 isoform X5

    UniProtKB/TrEMBL
    A0A9L0T7F2
    Related
    ENSECAP00000051073.1, ENSECAT00000069030.2
    Conserved Domains (3) summary
    pfam06741
    Location:154 → 215
    LsmAD; LsmAD domain
    pfam14438
    Location:13 → 86
    SM-ATX; Ataxin 2 SM domain
    cl26464
    Location:674 → 998
    Atrophin-1; Atrophin-1 family
Nucleotide Protein
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