GSE54939[Accession] - GEO DataSets - NCBI

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Select item 2000549391.

Leukocytes methylome of melanoma patients with and without CDKN2A mutations

(Submitter supplied) We investigated if the presence of germline CDKN2A mutations or the occurrence of cutaneous melanoma could induce constitutive genome-wide DNA methylation changes. We analyzed the leukocytes’ methylomes of eight patients carrying CDKN2A mutations, eight sporadic melanoma patients and compared them with healthy controls (n=8). The genome-wide DNA methylation profiling was obtained using the Infinium HumanMethylation450 BeadChip platform (Illumina).

Organism:: Homo sapiens

Type:: Methylation profiling by genome tiling array

Platform:: GPL13534
24 Samples

Download data: IDAT, TXT

Series

Accession:: GSE54939

ID:: 200054939

PubMed Similar studies Analyze with GEO2R

Select item 1000135342.

Illumina HumanMethylation450 BeadChip (HumanMethylation450_15017482)

(Submitter supplied) 1 difference between HumanMethylation450_15017482_v.1.1.bpm and HumanMethylation450_15017482_v.1.2.bpm: 1.1: 41636384,NEGATIVE,-99,Negative 604 1.2: 41636384,RESTORATION,Green,Restore Protocol: See manufacturer's website

Organism:: Homo sapiens

1671 Series
1 Related Platform
117793 Samples

Download data: BPM, CSV, TXT, XLSX

Platform

Accession:: GPL13534

ID:: 100013534

Select item 3013268453.

genomic DNA_control 8

Organism:: Homo sapiens

Source name:: control 8

Platform:: GPL13534
Series:: GSE54939

Download data: IDAT

Sample

Accession:: GSM1326845

ID:: 301326845

Select item 3013268444.

genomic DNA_control 7

Organism:: Homo sapiens

Source name:: control 7

Platform:: GPL13534
Series:: GSE54939

Download data: IDAT

Sample

Accession:: GSM1326844

ID:: 301326844

Select item 3013268435.

genomic DNA_control 6

Organism:: Homo sapiens

Source name:: control 6

Platform:: GPL13534
Series:: GSE54939

Download data: IDAT

Sample

Accession:: GSM1326843

ID:: 301326843

Select item 3013268426.

genomic DNA_control 5

Organism:: Homo sapiens

Source name:: control 5

Platform:: GPL13534
Series:: GSE54939

Download data: IDAT

Sample

Accession:: GSM1326842

ID:: 301326842

Select item 3013268417.

genomic DNA_control 4

Organism:: Homo sapiens

Source name:: control 4

Platform:: GPL13534
Series:: GSE54939

Download data: IDAT

Sample

Accession:: GSM1326841

ID:: 301326841

Select item 3013268408.

genomic DNA_control 3

Organism:: Homo sapiens

Source name:: control 3

Platform:: GPL13534
Series:: GSE54939

Download data: IDAT

Sample

Accession:: GSM1326840

ID:: 301326840

Select item 3013268399.

genomic DNA_control 2

Organism:: Homo sapiens

Source name:: control 2

Platform:: GPL13534
Series:: GSE54939

Download data: IDAT

Sample

Accession:: GSM1326839

ID:: 301326839

Select item 30132683810.

genomic DNA_control 1

Organism:: Homo sapiens

Source name:: control 1

Platform:: GPL13534
Series:: GSE54939

Download data: IDAT

Sample

Accession:: GSM1326838

ID:: 301326838

Select item 30132683711.

genomic DNA_sporadic melanoma 8

Organism:: Homo sapiens

Source name:: sporadic melanoma 8

Platform:: GPL13534
Series:: GSE54939

Download data: IDAT

Sample

Accession:: GSM1326837

ID:: 301326837

Select item 30132683612.

genomic DNA_sporadic melanoma 7

Organism:: Homo sapiens

Source name:: sporadic melanoma 7

Platform:: GPL13534
Series:: GSE54939

Download data: IDAT

Sample

Accession:: GSM1326836

ID:: 301326836

Select item 30132683513.

genomic DNA_sporadic melanoma 6

Organism:: Homo sapiens

Source name:: sporadic melanoma 6

Platform:: GPL13534
Series:: GSE54939

Download data: IDAT

Sample

Accession:: GSM1326835

ID:: 301326835

Select item 30132683414.

genomic DNA_sporadic melanoma 5

Organism:: Homo sapiens

Source name:: sporadic melanoma 5

Platform:: GPL13534
Series:: GSE54939

Download data: IDAT

Sample

Accession:: GSM1326834

ID:: 301326834

Select item 30132683315.

genomic DNA_sporadic melanoma 4

Organism:: Homo sapiens

Source name:: sporadic melanoma 4

Platform:: GPL13534
Series:: GSE54939

Download data: IDAT

Sample

Accession:: GSM1326833

ID:: 301326833

Select item 30132683216.

genomic DNA_sporadic melanoma 3

Organism:: Homo sapiens

Source name:: sporadic melanoma 3

Platform:: GPL13534
Series:: GSE54939

Download data: IDAT

Sample

Accession:: GSM1326832

ID:: 301326832

Select item 30132683117.

genomic DNA_sporadic melanoma 2

Organism:: Homo sapiens

Source name:: sporadic melanoma 2

Platform:: GPL13534
Series:: GSE54939

Download data: IDAT

Sample

Accession:: GSM1326831

ID:: 301326831

Select item 30132683018.

genomic DNA_sporadic melanoma 1

Organism:: Homo sapiens

Source name:: sporadic melanoma 1

Platform:: GPL13534
Series:: GSE54939

Download data: IDAT

Sample

Accession:: GSM1326830

ID:: 301326830

Select item 30132682919.

genomic DNA_CDKN2A-mutation carrier 8

Organism:: Homo sapiens

Source name:: CDKN2A-mutation carrier 8

Platform:: GPL13534
Series:: GSE54939

Download data: IDAT

Sample

Accession:: GSM1326829

ID:: 301326829

Select item 30132682820.

genomic DNA_CDKN2A-mutation carrier 7

Organism:: Homo sapiens

Source name:: CDKN2A-mutation carrier 7

Platform:: GPL13534
Series:: GSE54939

Download data: IDAT

Sample

Accession:: GSM1326828

ID:: 301326828

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