|
Status |
Public on Sep 15, 2014 |
Title |
genomic DNA_sporadic melanoma 6 |
Sample type |
genomic |
|
|
Source name |
sporadic melanoma 6
|
Organism |
Homo sapiens |
Characteristics |
gender: male cdkn2a status: wild type
|
Extracted molecule |
genomic DNA |
Extraction protocol |
Genomic DNA was extracted from leukocytes using Gentra Puregene Blood Core Kit (Qiagen) or QIAmp DNA Blood Mini QIACUBE kit (Quiagen)
|
Label |
Cy5 and Cy3
|
Label protocol |
Standard Illumina Protocol
|
|
|
Hybridization protocol |
Bisulphite converted DNA (EZ DNA methylation kit; Zymo Research) was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
|
Scan protocol |
Arrays were imaged using Illumina iScan according standard recommended Illumina scanner setting
|
Description |
leukocyte's DNA from sporadic melanoma patient 6
|
Data processing |
Data normalization was performed using the pipeline described in Touleimat and Tost, 2012 (Epigenomics, 4(3):325-41)
|
|
|
Submission date |
Feb 12, 2014 |
Last update date |
Sep 15, 2014 |
Contact name |
Érica Sara Souza de Araújo |
E-mail(s) |
erica.sara.araujo@gmail.com
|
Organization name |
A. C. Camargo Cancer Center
|
Department |
CIPE - Internacional Center for Research and Training
|
Street address |
Taguá st, 440
|
City |
Sao Paulo |
State/province |
Sao Paulo |
ZIP/Postal code |
01508010 |
Country |
Brazil |
|
|
Platform ID |
GPL13534 |
Series (1) |
GSE54939 |
Leukocytes methylome of melanoma patients with and without CDKN2A mutations |
|