GEO DataSets

(Submitter supplied) To examine differential effect of the mutation of rice OsPIPT6 on the gene exoression in shoot and root tissues, we performed microarray analysis using shoot and root tissues of wild-type and ospipt6-KO mutant.

Organism:

Oryza sativa

Type:

Expression profiling by array

Platform:

GPL6864

12 Samples

Download data: TXT

(Submitter supplied) Transcriptional profiling of wild-type (WT) and RDD4 overexpressing plants (RDD4-OX) to examine function of RDD4 in rice

Organism:

Oryza sativa

Type:

Expression profiling by array

Platform:

GPL6864

3 Samples

Download data: TXT

(Submitter supplied) A continuous gene expression profiling of leaves at regular interval was performed to understand the changes of transcriptional program and physiological state of the rice plant under two different field conditions.

Organism:

Oryza sativa; Oryza sativa Japonica Group; Oryza sativa Indica Group

Type:

Expression profiling by array

Platform:

GPL6864

129 Samples

Download data: TXT

(Submitter supplied) Transcriptional profiling of wild-type (WT) and RDD2 overexpressing plants (RDD2-OX) to examine function of RDD2 in rice

Organism:

Oryza sativa

Type:

Expression profiling by array

Platform:

GPL6864

6 Samples

Download data: TXT

(Submitter supplied) Transcriptional profiling of rice shootunder drought condition. Goal was to determine the effects of drought on changes in gene expression.

Organism:

Oryza sativa

Type:

Expression profiling by array

Platform:

GPL6864

8 Samples

Download data: TXT

(Submitter supplied) Transcriptional profiling of rice shoot or root treated with acetate. Goal was to determine the effects of acetate on changes in gene expression.

Organism:

Oryza sativa

Type:

Expression profiling by array

Platform:

GPL6864

36 Samples

Download data: TXT

(Submitter supplied) Elevated CO2 (eCO2) condition has influence on developing leaf growth of rice (Oryza sativa cv. Nipponbare), specifically lower than P4 (plastochron number) stage, resulting in decrease in leaf size compared with that grown at ambient CO2 (aCO2). In this case, decrease in leaf size seems to be one of acclimation process at CO2 replete environment despite of the fact that number of tiller increase during CO2 replete periods; however, it is not yet elucidated which endogenous signal play a precise role in depression of developing leaf growth in those process. more...

Organism:

Oryza sativa

Type:

Expression profiling by array

Platform:

GPL6864

16 Samples

Download data: TXT

(Submitter supplied) Elevated CO2 (eCO2) condition has influence on developing leaf growth of rice (Oryza sativa cv. Nipponbare), specifically lower than P4 (plastochron number) stage, resulting in decrease in leaf size compared with that grown at ambient CO2 (aCO2). In this case, decrease in leaf size seems to be one of acclimation process at CO2 replete environment despite of the fact that number of tiller increase during CO2 replete periods; however, it is not yet elucidated which endogenous signal play a precise role in depression of developing leaf growth in those process. more...

Organism:

Oryza sativa

Type:

Expression profiling by array

Platform:

GPL6864

12 Samples

Download data: TXT

(Submitter supplied) Rice leaves consist of three distinct regions along a proximal-distal axis, namely, the leaf blade, sheath, and blade-sheath boundary region. Each region has a unique morphology and function, however,but the genetic programs underlying the development of each region are poorly understood. To capture the entire picture of rice leaf development and to discover genes with unique functions in rice and grasses, it is crucial to explore genome-wide transcriptional profiles during the development of the three regions. more...

Organism:

Oryza sativa; Oryza sativa Japonica Group

Type:

Expression profiling by array

Platform:

GPL6864

36 Samples

Download data: TXT

(Submitter supplied) Rare sugars are monosaccharides that are rarely present in nature. To reveal a effect of D-tagatose in plant and the responses to the D-Tagatose in rice at gene expression level, we performed a microarray analysis using the Agilent Rice Oligo Microarray (44K, custom-made; Agilent Technologies, Redwood City, CA, USA). As a result, there are no significant differences on the gene expression patterns between in mock- and D-tagatose-treated rice plants, and several PR-protein genes which had been reported to be induced by D-allulose or D-allose treatment, were compared by that with D-tagatose treatment in rice.

Organism:

Oryza sativa

Type:

Expression profiling by array

Platform:

GPL6864

3 Samples

Download data: TXT, XLS

(Submitter supplied) The plant volatilebeta-cyclocitral plays important roles in the regulation of defense responses in rice. To clarify the response to beta-cyclocitral in rice at gene expression level, we performed a microarray analysis using the Agilent Rice Oligo Microarray (44k, custom-made; Agilent Technologies, Redwood City, CA, USA). As a result, treatment of linalool caused high upregulation of many defense-related genes including pathogenesis-related (PR) genes in rice.

Organism:

Oryza sativa

Type:

Expression profiling by array

Platform:

GPL6864

8 Samples

Download data: TXT

(Submitter supplied) A comparative transcriptomic study of the impact of salt toxicity on rice plant (Oryza sativa L.; cv 'I Kong Pao') after short term (48 hours) exposure to NaCl (200 mM) or Na2SO4 (100 mM). Twenty five days old rice seedlings were exposed to 0, 200 mM NaCl or 100 mM Na2SO4 for 48 hours in hydroponic culture. Comparison between control and salt-stressed plants were done at the shoot and the root levels. more...

Organism:

Oryza sativa

Type:

Expression profiling by array

Platform:

GPL6864

12 Samples

Download data: TXT

(Submitter supplied) The elongation growth of japonica rice (cv. Nipponbare) coleoptiles was found to be inhibited specifically by a short UV-B irradiation (e.g., 10 min) that provides a fluence as low as 1.0 μmol m-2. Here we analyzed if there is a similar response at transcriptional level using rice microarray.

Organism:

Oryza sativa; Oryza sativa Japonica Group

Type:

Expression profiling by array

Platform:

GPL6864

12 Samples

Download data: TXT

(Submitter supplied) Whole genome microarray expression profiling was used to identify potential downstream targets and understand cellular processes regulated by a plant ASR protein, particularly HvASR5 from barley, involved in abiotic stress tolerance in cereals. When expressed ectopically, HvASR5 is able to improve growth performance of rice plants under stress conditions. For this experiment, leaf samples from transgenic rice lines overexpressing HvASR5 were compared to wild-type plants. more...

Organism:

Oryza sativa

Type:

Expression profiling by array

Platform:

GPL6864

3 Samples

Download data: TXT

(Submitter supplied) Transcriptional analyses of rice roots comparing WT-NPA with WT+NPA or with iaa13-NPA.

Organism:

Oryza sativa

Type:

Expression profiling by array

Platform:

GPL6864

6 Samples

Download data: TXT

(Submitter supplied) Nitrogen (N) and phosphorus (P) are pivotal element for proper plant growth and development. We performed microarray analysis of rice shoot and root after nitrogen deficiency (-N) treatment under phosphorus deficiency (-P) condition to obtain a global view of gene regulations associated with plant response to -N under -P condition.

Organism:

Oryza sativa Japonica Group; Oryza sativa

Type:

Expression profiling by array

Platform:

GPL6864

12 Samples

Download data: TXT

(Submitter supplied) Phosphorus (P) are pivotal element for proper plant growth and development. We performed microarray analysis of rice root under phosphorus deficiency (-P) to obtain a global view of gene regulations associated with plant response to -P.

Organism:

Oryza sativa Japonica Group; Oryza sativa

Type:

Expression profiling by array

Platform:

GPL6864

6 Samples

Download data: TXT

(Submitter supplied) Nitrogen (N) are pivotal element for proper plant growth and development. We performed microarray analysis of rice shoot under nitrogen deficiency (-N) to obtain a global view of gene regulations associated with plant response to -N.

Organism:

Oryza sativa; Oryza sativa Japonica Group

Type:

Expression profiling by array

Platform:

GPL6864

6 Samples

Download data: TXT

(Submitter supplied) Macronutrients are pivotal elements for proper plant growth and development. We performed microarray analysis of rice shoot under nitrogen (N), phosphorus (P), and potassium (K) excess to obtain a global view of gene regulations associated with plant response to essential nutrients.

Organism:

Oryza sativa; Oryza sativa Japonica Group

Type:

Expression profiling by array

Platform:

GPL6864

36 Samples

Download data: TXT

(Submitter supplied) Macronutrients are pivotal elements for proper plant growth and development. We performed microarray analysis of rice root under nitrogen (N), phosphorus (P), and potassium (K) deficiency conditions to obtain a global view of gene regulations associated with plant response to essential nutrients.

Organism:

Oryza sativa; Oryza sativa Japonica Group

Type:

Expression profiling by array

Platform:

GPL6864

24 Samples

Download data: TXT