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    Crybg2 crystallin beta-gamma domain containing 2 [ Mus musculus (house mouse) ]

    Gene ID: 230806, updated on 5-Mar-2024

    Summary

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    Official Symbol
    Crybg2provided by MGI
    Official Full Name
    crystallin beta-gamma domain containing 2provided by MGI
    Primary source
    MGI:MGI:1334463
    See related
    Ensembl:ENSMUSG00000012123 AllianceGenome:MGI:1334463
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Aim1l
    Summary
    Orthologous to human CRYBG2 (crystallin beta-gamma domain containing 2). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in small intestine adult (RPKM 12.2), colon adult (RPKM 10.2) and 7 other tissues See more
    Orthologs
    human all
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    Genomic context

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    Location:
    4 D2.3; 4 66.5 cM
    Exon count:
    25
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (133788042..133819815)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (134060731..134092504)

    Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_11665 Neighboring gene lin-28 homolog A Neighboring gene zinc finger protein 683 Neighboring gene STARR-positive B cell enhancer ABC_E1658 Neighboring gene STARR-positive B cell enhancer ABC_E9600 Neighboring gene STARR-positive B cell enhancer ABC_E842 Neighboring gene STARR-positive B cell enhancer ABC_E4678 Neighboring gene STARR-positive B cell enhancer ABC_E10264 Neighboring gene CD52 antigen Neighboring gene UBX domain protein 11 Neighboring gene STARR-seq mESC enhancer starr_11667 Neighboring gene CapStarr-seq enhancer MGSCv37_chr4:133677585-133677803 Neighboring gene CapStarr-seq enhancer MGSCv37_chr4:133680177-133680360

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Cloning and tissue expression of the mouse ortholog of AIM1, a betagamma-crystallin superfamily member. Teichmann U, et al. Mamm Genome, 1998 Sep. PMID 9716656
    2. A comparison of whole-genome shotgun-derived mouse chromosome 16 and the human genome. Mural RJ, et al. Science, 2002 May 31. PMID 12040188
    3. Construction of a multi-functional cDNA library specific for mouse pancreatic islets and its application to microarray. Nishimura M, et al. DNA Res, 2004 Oct 31. PMID 15747579
    4. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article
    5. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article

    See all (13) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • MGC183649

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    beta/gamma crystallin domain-containing protein 2
    Names
    absent in melanoma 1-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001162970.1 → NP_001156442.1  beta/gamma crystallin domain-containing protein 2

      See identical proteins and their annotated locations for NP_001156442.1

      Status: VALIDATED

      Source sequence(s)
      AK145690, AL670680, BP759371
      Consensus CDS
      CCDS51323.1
      UniProtKB/TrEMBL
      B2RWW9, B7ZCC2
      Related
      ENSMUSP00000114099.2, ENSMUST00000121391.8
      Conserved Domains (6) summary
      PHA03247
      Location:354 → 607
      PHA03247; large tegument protein UL36; Provisional
      PHA03378
      Location:726 → 858
      PHA03378; EBNA-3B; Provisional
      PRK11901
      Location:262 → 439
      PRK11901; hypothetical protein; Reviewed
      pfam00030
      Location:1024 → 1110
      Crystall; Beta/Gamma crystallin
      cl02528
      Location:842 → 920
      Crystall; Beta/Gamma crystallin
      cl26069
      Location:1384 → 1511
      Ricin_B_lectin; Ricin-type beta-trefoil lectin domain

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000070.7 Reference GRCm39 C57BL/6J

      Range
      133788042..133819815
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006538748.4 → XP_006538811.1  beta/gamma crystallin domain-containing protein 2 isoform X1

      UniProtKB/TrEMBL
      A0A2I3BQG2, B2RWW9
      Related
      ENSMUSP00000154159.2, ENSMUST00000227683.2
      Conserved Domains (6) summary
      PHA03247
      Location:663 → 916
      PHA03247; large tegument protein UL36; Provisional
      PHA03378
      Location:1035 → 1167
      PHA03378; EBNA-3B; Provisional
      PRK11901
      Location:571 → 748
      PRK11901; hypothetical protein; Reviewed
      pfam00030
      Location:1333 → 1419
      Crystall; Beta/Gamma crystallin
      cl02528
      Location:1151 → 1229
      Crystall; Beta/Gamma crystallin
      cl26069
      Location:1693 → 1820
      Ricin_B_lectin; Ricin-type beta-trefoil lectin domain

    2. XM_006538750.2 → XP_006538813.1  beta/gamma crystallin domain-containing protein 2 isoform X2

      See identical proteins and their annotated locations for XP_006538813.1

      UniProtKB/TrEMBL
      B2RWW9, B7ZCC2
      Conserved Domains (6) summary
      PHA03247
      Location:354 → 607
      PHA03247; large tegument protein UL36; Provisional
      PHA03378
      Location:726 → 858
      PHA03378; EBNA-3B; Provisional
      PRK11901
      Location:262 → 439
      PRK11901; hypothetical protein; Reviewed
      pfam00030
      Location:1024 → 1110
      Crystall; Beta/Gamma crystallin
      cl02528
      Location:842 → 920
      Crystall; Beta/Gamma crystallin
      cl26069
      Location:1384 → 1511
      Ricin_B_lectin; Ricin-type beta-trefoil lectin domain

    3. XM_006538751.5 → XP_006538814.1  beta/gamma crystallin domain-containing protein 2 isoform X2

      See identical proteins and their annotated locations for XP_006538814.1

      UniProtKB/TrEMBL
      B2RWW9, B7ZCC2
      Conserved Domains (6) summary
      PHA03247
      Location:354 → 607
      PHA03247; large tegument protein UL36; Provisional
      PHA03378
      Location:726 → 858
      PHA03378; EBNA-3B; Provisional
      PRK11901
      Location:262 → 439
      PRK11901; hypothetical protein; Reviewed
      pfam00030
      Location:1024 → 1110
      Crystall; Beta/Gamma crystallin
      cl02528
      Location:842 → 920
      Crystall; Beta/Gamma crystallin
      cl26069
      Location:1384 → 1511
      Ricin_B_lectin; Ricin-type beta-trefoil lectin domain

    RNA

    1. XR_003954928.1 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

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