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    NFAT NFAT nuclear factor [ Tribolium castaneum (red flour beetle) ]

    Gene ID: 663601, updated on 10-May-2024

    Summary

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    Gene symbol
    NFAT
    Gene description
    NFAT nuclear factor
    Locus tag
    TcasGA2_TC014708
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Tribolium castaneum
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Coleoptera; Polyphaga; Cucujiformia; Tenebrionidae; Tenebrionidae incertae sedis; Tribolium
    Also known as
    rel
    Orthologs
    fruit fly all
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    Genomic context

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    See NFAT in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_04 current icTriCast1.1 (GCF_031307605.1) 5 NC_087398.1 (2072173..2110035, complement)
    103 previous assembly Tcas5.2 (GCF_000002335.3) Linkage Group LG5 NC_007420.3 (13664297..13702165)

    Chromosome 5 - NC_087398.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC103312359 Neighboring gene uncharacterized LOC135266250 Neighboring gene BTB/POZ domain-containing protein 6 Neighboring gene tetraspanin-7 Neighboring gene quail

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. BeetleBase in 2010: revisions to provide comprehensive genomic information for Tribolium castaneum. Kim HS, et al. Nucleic Acids Res, 2010 Jan. PMID 19820115, Free PMC Article
    2. The genome of the model beetle and pest Tribolium castaneum. Tribolium Genome Sequencing Consortium, et al. Nature, 2008 Apr 24. PMID 18362917

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transcription factor binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of transcription regulator complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein NFAT
    Names
    AUGUSTUS-3.0.2_14708
    AUGUSTUS-3.0.2_33235
    GLEAN_14708
    Nuclear factor of activated T-cells 5-like Protein
    v-rel avian reticuloendotheliosis viral oncogene homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_031307605.1-RS_2024_04

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference icTriCast1.1 Primary Assembly

    Genomic

    1. NC_087398.1 Reference icTriCast1.1 Primary Assembly

      Range
      2072173..2110035 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015980198.2 → XP_015835684.2  uncharacterized protein NFAT isoform X3

    2. XM_008196143.3 → XP_008194365.2  uncharacterized protein NFAT isoform X2

    3. XM_008196142.3 → XP_008194364.2  uncharacterized protein NFAT isoform X1

    4. XM_008196145.3 → XP_008194367.1  uncharacterized protein NFAT isoform X4

      See identical proteins and their annotated locations for XP_008194367.1

      UniProtKB/TrEMBL
      D6WNZ3
      Conserved Domains (2) summary
      pfam16179
      Location:345 → 442
      RHD_dimer; Rel homology dimerization domain
      cl08275
      Location:176 → 339
      RHD-n; N-terminal sub-domain of the Rel homology domain (RHD)

    5. XM_008196144.3 → XP_008194366.1  uncharacterized protein NFAT isoform X4

      See identical proteins and their annotated locations for XP_008194366.1

      UniProtKB/TrEMBL
      D6WNZ3
      Conserved Domains (2) summary
      pfam16179
      Location:345 → 442
      RHD_dimer; Rel homology dimerization domain
      cl08275
      Location:176 → 339
      RHD-n; N-terminal sub-domain of the Rel homology domain (RHD)
    Nucleotide Protein Strain
    Heading Accession and Version

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