U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    wiza WIZ zinc finger a [ Danio rerio (zebrafish) ]

    Gene ID: 556689, updated on 27-Mar-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    wizaprovided by ZNC
    Official Full Name
    WIZ zinc finger aprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-5663
    See related
    Ensembl:ENSDARG00000096428 AllianceGenome:ZFIN:ZDB-GENE-030131-5663
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fi11h08; wu:fi11h08; si:dkey-217d24.6
    Summary
    Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human WIZ (WIZ zinc finger). [provided by Alliance of Genome Resources, Apr 2022]
    Orthologs
    all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See wiza in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 6 NC_007117.7 (8453121..8466767, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 6 NC_007117.6 (8217582..8231223, complement)

    Chromosome 6 - NC_007117.7Genomic Context describing neighboring genes Neighboring gene prostaglandin E receptor 1a (subtype EP1) Neighboring gene uncharacterized LOC103911170 Neighboring gene RAS protein activator like 3 Neighboring gene peptidoglycan recognition protein 2

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Melanoma genome evolution across species. Kansler ER, et al. BMC Genomics, 2017 Feb 7. PMID 28173755, Free PMC Article
    2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    protein Wiz

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007117.7 Reference GRCz11 Primary Assembly

      Range
      8453121..8466767 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005165748.4 → XP_005165805.1  protein Wiz isoform X2

      UniProtKB/TrEMBL
      A0A8M2BD09
      Conserved Domains (1) summary
      COG5180
      Location:820 → 993
      PBP1; PAB1-binding protein PBP1, interacts with poly(A)-binding protein [RNA processing and modification]

    2. XM_009302168.3 → XP_009300443.1  protein Wiz isoform X1

      See identical proteins and their annotated locations for XP_009300443.1

      UniProtKB/TrEMBL
      A0A8M3AT47, I3ITC3
      Conserved Domains (1) summary
      COG5180
      Location:821 → 994
      PBP1; PAB1-binding protein PBP1, interacts with poly(A)-binding protein [RNA processing and modification]

    3. XM_679537.8 → XP_684629.3  protein Wiz isoform X1

      See identical proteins and their annotated locations for XP_684629.3

      UniProtKB/TrEMBL
      A0A8M3AT47, I3ITC3
      Related
      ENSDARP00000126186.1, ENSDART00000151227.3
      Conserved Domains (1) summary
      COG5180
      Location:821 → 994
      PBP1; PAB1-binding protein PBP1, interacts with poly(A)-binding protein [RNA processing and modification]
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Tools