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    ARID1A AT-rich interaction domain 1A [ Cervus elaphus (red deer) ]

    Gene ID: 122698398, updated on 22-Mar-2024

    Summary

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    Gene symbol
    ARID1A
    Gene description
    AT-rich interaction domain 1A
    See related
    EnsemblRapid:ENSCESG00005008092
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cervus elaphus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Cervidae; Cervinae; Cervus
    Orthologs
    human mouse all
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    Genomic context

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    See ARID1A in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    20
    Annotation release Status Assembly Chr Location
    100 current mCerEla1.1 (GCF_910594005.1) 8 NC_057822.1 (9524017..9592780)

    Chromosome 8 - NC_057822.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC122698397 Neighboring gene ribosomal protein S6 kinase A1 Neighboring gene 60S ribosomal protein L21-like Neighboring gene uncharacterized LOC122698400 Neighboring gene phosphatidylinositol glycan anchor biosynthesis class V

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_057822.1 Chromosome 8 Reference mCerEla1.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables nucleosome binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in chromatin remodeling IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of SWI/SNF complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of brahma complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of nBAF complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    AT-rich interactive domain-containing protein 1A

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Cervus elaphus Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference mCerEla1.1

    Genomic

    1. NC_057822.1 Reference mCerEla1.1

      Range
      9524017..9592780
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_043909359.1 → XP_043765294.1  AT-rich interactive domain-containing protein 1A isoform X1

      Conserved Domains (3) summary
      TIGR01628
      Location:375 → 472
      PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
      pfam09606
      Location:680 → 951
      Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
      cd16876
      Location:1022 → 1114
      ARID_ARID1A; ARID/BRIGHT DNA binding domain of AT-rich interactive domain-containing protein 1A (ARID1A) and similar proteins

    2. XM_043909363.1 → XP_043765298.1  AT-rich interactive domain-containing protein 1A isoform X4

      Conserved Domains (3) summary
      TIGR01628
      Location:375 → 472
      PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
      pfam09606
      Location:680 → 951
      Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
      cd16876
      Location:1022 → 1114
      ARID_ARID1A; ARID/BRIGHT DNA binding domain of AT-rich interactive domain-containing protein 1A (ARID1A) and similar proteins

    3. XM_043909361.1 → XP_043765296.1  AT-rich interactive domain-containing protein 1A isoform X3

      Conserved Domains (3) summary
      TIGR01628
      Location:375 → 472
      PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
      pfam09606
      Location:680 → 951
      Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
      cd16876
      Location:1022 → 1114
      ARID_ARID1A; ARID/BRIGHT DNA binding domain of AT-rich interactive domain-containing protein 1A (ARID1A) and similar proteins

    4. XM_043909364.1 → XP_043765299.1  AT-rich interactive domain-containing protein 1A isoform X5

      Conserved Domains (3) summary
      TIGR01628
      Location:375 → 472
      PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
      pfam09606
      Location:680 → 951
      Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
      cd16876
      Location:1022 → 1114
      ARID_ARID1A; ARID/BRIGHT DNA binding domain of AT-rich interactive domain-containing protein 1A (ARID1A) and similar proteins

    5. XM_043909365.1 → XP_043765300.1  AT-rich interactive domain-containing protein 1A isoform X6

      Conserved Domains (4) summary
      TIGR01628
      Location:375 → 472
      PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
      PRK07764
      Location:601 → 732
      PRK07764; DNA polymerase III subunits gamma and tau; Validated
      pfam09606
      Location:716 → 950
      Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
      cd16876
      Location:1021 → 1113
      ARID_ARID1A; ARID/BRIGHT DNA binding domain of AT-rich interactive domain-containing protein 1A (ARID1A) and similar proteins

    6. XM_043909360.1 → XP_043765295.1  AT-rich interactive domain-containing protein 1A isoform X2

      Related
      ENSCESP00005010700.1, ENSCEST00005012693.1
      Conserved Domains (4) summary
      TIGR01628
      Location:375 → 472
      PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
      PRK07764
      Location:601 → 732
      PRK07764; DNA polymerase III subunits gamma and tau; Validated
      pfam09606
      Location:716 → 950
      Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
      cd16876
      Location:1021 → 1113
      ARID_ARID1A; ARID/BRIGHT DNA binding domain of AT-rich interactive domain-containing protein 1A (ARID1A) and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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