1RYU


Conserved Protein Domain Family
ARID_ARID1A

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cd16876: ARID_ARID1A 
Click on image for an interactive view with Cn3D
ARID/BRIGHT DNA binding domain of AT-rich interactive domain-containing protein 1A (ARID1A) and similar proteins
ARID1A, also called B120, BRG1-associated factor 250a (BAF250A), Osa homolog 1(OSA1), SWI-like protein, SWI/SNF complex protein p270, or SWI/SNF-related, matrix-associated, actin-dependent regulator of chromatin subfamily F member 1 (SWI1), has been identified as a novel tumor suppressor in various tumor types. It interacts with BRG1 adenosine triphosphatase to form a SWItch/Sucrose NonFermentable (SWI/SNF) chromatin remodeling protein complex, which plays a critical role in transcriptional control and gene expression. ARID1A contains an AT-rich DNA-interacting domain (ARID, also known as BRIGHT), and Eld/Osa homology domains (EHD) 1 and 2 within the C-terminus. The ARID in ARID1A binds nonspecific DNA in general and plays an important role in targeting SWI/SNF to chromatin. The EHD1 may be capable of mediating an intramolecular association with EHD2, and/or an intermolecular association resulting in homo- or hetero-dimerization. The EHD2 binds Swi2/Brahma homologue Brahma-related gene 1 (BRG1, also known as Snf2b), a human homologue of yeast Swi2.
Statistics
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PSSM-Id: 350640
Aligned: 5 rows
Threshold Bit Score: 192.571
Created: 12-Sep-2013
Updated: 11-Jul-2018
Structure
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Program:
Drawing:
Aligned Rows:
 
putative DNA
Conserved site includes 16 residues -Click on image for an interactive view with Cn3D
Feature 1:putative DNA binding site [nucleic acid binding site]
Evidence:
  • Comment:Based on the structure evidence that Drosophila melanogaster Dead Ringer (1KQQ) binds DNA through its ARID domain.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                               #######                        # ##  #         # ### #    
1RYU_A         19 PERKMWVDRYLAFTEEKAMGmTNLPAVGRKPLDLYRLYVSVKEIGGLtQVNKNKKWRELATNLNVGTSSSAASSLKKQYI 98   human
Q4SH46        988 PDRKMWVDRYLAFIEEKAMGlTNLPAVGRKPLDLFLLYTSVKGFGGMtQVNKNKKWRDLAASLNVGTSSSAASSLKKQYI 1067 spotted green...
XP_002934685  830 PDRKMWVDRYLSFTEEKAMGmTNLPAVGRKPLDLYRLYVSVKEIGGLtQVNKNKKWRELATNLNVGTSSSAASSLKKQYI 909  western clawe...
EOB02840      643 PERKIWVDRYLAFTEEKAMGmTNLPAVGRKPLDLYRLYISVKEIGGLtQVNKNKKWRELATNLNVGTSSSAASSLKKQYI 722  mallard
XP_007893121  541 PERKMWIDRYFAFMEEKGMMmTNLPAVGRKPLDLYRLYMSVKDIGGLtQVNKNKKWRELATNLSVGTSSSAASSLKKQYI 620  elephant shark
Feature 1                      
1RYU_A         99 QCLYAFECKIERG 111  human
Q4SH46       1068 QCLYAFECKVERG 1080 spotted green pufferfish
XP_002934685  910 QCLYAFECKIERG 922  western clawed frog
EOB02840      723 QCLYAFECKIERG 735  mallard
XP_007893121  621 QCLFAFECKIERG 633  elephant shark

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