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    Slc48a1 solute carrier family 48 member 1 [ Ictidomys tridecemlineatus (thirteen-lined ground squirrel) ]

    Gene ID: 106144879, updated on 13-Mar-2024

    Summary

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    Gene symbol
    Slc48a1
    Gene description
    solute carrier family 48 member 1
    See related
    EnsemblRapid:ENSSTOG00015018341
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Ictidomys tridecemlineatus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciuromorpha; Sciuridae; Xerinae; Marmotini; Ictidomys
    Orthologs
    human mouse all
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    Genomic context

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    See Slc48a1 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    103 current HiC_Itri_2 (GCF_016881025.1) Unplaced Scaffold NW_024404945.1 (67484328..67505445, complement)
    102 previous assembly SpeTri2.0 (GCF_000236235.1) Unplaced Scaffold NW_004936512.1 (5672952..5680502)

    NW_024404945.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC120888631 Neighboring gene histone deacetylase 7 Neighboring gene rap guanine nucleotide exchange factor 3 Neighboring gene transfer RNA alanine (anticodon AGC) Neighboring gene 60S ribosomal protein L36a-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables heme binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables heme transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in heme transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in lysosomal membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    heme transporter HRG1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Ictidomys tridecemlineatus Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference HiC_Itri_2 Primary Assembly

    Genomic

    1. NW_024404945.1 Reference HiC_Itri_2 Primary Assembly

      Range
      67484328..67505445 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040280766.1 → XP_040136700.1  heme transporter HRG1 isoform X4

    2. XM_040280764.1 → XP_040136698.1  heme transporter HRG1 isoform X1

    3. XM_013358516.3 → XP_013213970.1  heme transporter HRG1 isoform X3

      UniProtKB/TrEMBL
      I3N3Z7
      Related
      ENSSTOP00015022635.1, ENSSTOT00015024694.1
      Conserved Domains (1) summary
      pfam16954
      Location:71 → 122
      HRG; Haem-transporter, endosomal/lysosomal, haem-responsive gene

    4. XM_040280765.1 → XP_040136699.1  heme transporter HRG1 isoform X2

    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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