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    aff2 AF4/FMR2 family member 2 [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 100487096, updated on 8-Mar-2024

    Summary

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    Official Symbol
    aff2provided by Xenbase
    Official Full Name
    AF4/FMR2 family member 2provided by Xenbase
    Primary source
    Xenbase:XB-GENE-952102
    See related
    Ensembl:ENSXETG00000019630
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Also known as
    FMR2; MRX2; OX19; FMR-2; FMR2P; FRAXE; XLID109
    Orthologs
    human mouse all
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    Genomic context

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    See aff2 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    21
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 8 NC_030684.2 (57084440..57417127)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 8 NC_030684.1 (35896103..36240256)

    Chromosome 8 - NC_030684.2Genomic Context describing neighboring genes Neighboring gene SLIT and NTRK like family member 2 Neighboring gene fragile X messenger ribonucleoprotein 1 Neighboring gene transmembrane protein 185A Neighboring gene iduronate 2-sulfatase Neighboring gene uncharacterized LOC116406926

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables G-quadruplex RNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in regulation of RNA splicing IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    acts_upstream_of_or_within regulation of gene expression IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    is_active_in nuclear speck IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  
    NOT part_of super elongation complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    AF4/FMR2 family member 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030684.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      57084440..57417127
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002934547.5 → XP_002934593.2  AF4/FMR2 family member 2

      UniProtKB/TrEMBL
      F6WY12
      Related
      ENSXETP00000042503.5, ENSXETT00000042503.5
      Conserved Domains (2) summary
      pfam05110
      Location:19 → 1253
      AF-4; AF-4 proto-oncoprotein
      pfam09309
      Location:646 → 715
      FCP1_C; FCP1, C-terminal
    Nucleotide Protein Strain
    Heading Accession and Version

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