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    LOC100366916 SPARC-like [ Saccoglossus kowalevskii ]

    Gene ID: 100366916, updated on 19-Oct-2023

    Summary

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    Gene symbol
    LOC100366916
    Gene description
    SPARC-like
    See related
    EnsemblRapid:LOC100366916
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Saccoglossus kowalevskii
    Lineage
    Eukaryota; Metazoa; Hemichordata; Enteropneusta; Harrimaniidae; Saccoglossus
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    Genomic context

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    See LOC100366916 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    101 current Skow_1.1 (GCF_000003605.2) Unplaced Scaffold NW_003129889.1 (58921..96327, complement)

    NW_003129889.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102810422 Neighboring gene poly(U)-binding-splicing factor PUF60-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_003129889 unplaced scaffold reference Skow_1.1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables collagen binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables extracellular matrix binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in anatomical structure development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular space IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    SPARC-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Saccoglossus kowalevskii Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Skow_1.1 Primary Assembly

    Genomic

    1. NW_003129889.1 Reference Skow_1.1 Primary Assembly

      Range
      58921..96327 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002735750.2 → XP_002735796.1  SPARC-like

      Related
      XP_002735796.1, XM_002735750.2
      Conserved Domains (3) summary
      smart00280
      Location:56 → 100
      KAZAL; Kazal type serine protease inhibitors
      cd00252
      Location:106 → 211
      SPARC_EC; SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate ...
      pfam10591
      Location:105 → 207
      SPARC_Ca_bdg; Secreted protein acidic and rich in cysteine Ca binding region

    2. XM_006817776.1 → XP_006817839.1  SPARC-like

      Related
      XP_006817839.1, XM_006817776.1
      Conserved Domains (3) summary
      smart00280
      Location:58 → 102
      KAZAL; Kazal type serine protease inhibitors
      cd00252
      Location:108 → 213
      SPARC_EC; SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate ...
      pfam10591
      Location:107 → 209
      SPARC_Ca_bdg; Secreted protein acidic and rich in cysteine Ca binding region
    Nucleotide Protein
    Heading Accession and Version

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