GTR Test Accession:
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GTR000515734.1
Last updated in GTR: 2014-09-09
View version history
GTR000515734.1, last updated: 2014-09-09
Last annual review date for the lab: 2024-03-13
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At a Glance
Test purpose:
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Diagnosis
Conditions (5):
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Kearns-Sayre syndrome; Mitochondrial DNA Deletion Syndromes; Mitochondrial disease; ...
Mitochondrion
Genes (7):
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MGME1 (20p11.23), MTRFR (12q24.31), POLG (15q26.1), POLG2 (17q23.3), RRM2B (8q22.3), ...
Methods (5):
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Molecular Genetics - Deletion/duplication analysis: Long range PCR; Multiplex Ligation-dependent Probe Amplification (MLPA); PCR-RFLP with Southern hybridization; ...
Target population: Help
Not provided
Clinical validity:
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Not provided
Clinical utility:
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Not provided
Ordering Information
Offered by:
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Test short name:
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KSS
Specimen Source:
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- Amniotic fluid
- Buccal swab
- Cell culture
- Chorionic villi
- Cord blood
- Dried blood spot (DBS) card
- Fetal blood
- Fibroblasts
- Fresh tissue
- Frozen tissue
- Paraffin block
- Peripheral (whole) blood
- Product of conception (POC)
- Urine
- View specimen requirements
Who can order: Help
- Genetic Counselor
- Health Care Provider
Lab contact:
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Contact Policy:
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Laboratory can only accept contact from health care providers. Patients/families are encouraged to discuss genetic testing options with their health care provider.
How to Order:
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Test service:
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Clinical Testing/Confirmation of Mutations Identified Previously
Genetic counseling
Identity Testing
Preimplantation Genetic Diagnosis (PGD)
Result interpretation
Uniparental Disomy (UPD) Testing
X-Chromosome Inactivation Studies
Genetic counseling
Identity Testing
Preimplantation Genetic Diagnosis (PGD)
Result interpretation
Uniparental Disomy (UPD) Testing
X-Chromosome Inactivation Studies
Test development:
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Test developed by laboratory (no manufacturer test name)
Informed consent required:
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Decline to answer
Pre-test genetic counseling required:
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Decline to answer
Post-test genetic counseling required:
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Decline to answer
Recommended fields not provided:
Test Order Code,
Test strategy
Conditions
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Total conditions: 5
Condition/Phenotype | Identifier |
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Test Targets
Chromosomal regions/Mitochondria
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Total chromosomal regions/mitochondria: 1
Chromosomal region/Mitochondrion | Associated condition |
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Genes
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Total genes: 7
Gene | Associated Condition | Germline or Somatic | Allele (Lab-provided) | Variant in NCBI |
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Methodology
Total methods: 5
Method Category
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Test method
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Instrument *
Deletion/duplication analysis
Long range PCR
Deletion/duplication analysis
Multiplex Ligation-dependent Probe Amplification (MLPA)
Deletion/duplication analysis
PCR-RFLP with Southern hybridization
Mutation scanning of the entire coding region
Bi-directional Sanger Sequence Analysis
Sequence analysis of the entire coding region
Next-Generation (NGS)/Massively parallel sequencing (MPS)
* Instrument: Not provided
Clinical Information
Test purpose:
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Diagnosis
Variant Interpretation:
Are family members with defined clinical status recruited to assess significance of VUS without charge?
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Yes.
Yes.
Will the lab re-contact the ordering physician if variant interpretation changes?
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Yes.
Yes.
Recommended fields not provided:
Clinical validity,
Clinical utility,
Target population,
What is the protocol for interpreting a variation as a VUS?,
Is research allowed on the sample after clinical testing is complete?,
Sample negative report,
Sample positive report
Technical Information
Availability:
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Tests performed
Entire test performed in-house
Entire test performed in-house
Analytical Validity:
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Sanger Sequencing: Sensitivity >98%; MLPA: Sensitivity >95%, specifity >95% NGS_Our diagnostic criteria requires: (i) at least 98% of the sequencing reads have a quality score (Q) above 30 (99,9% accurate), (ii) a median per base sequence quality score (Q) above 30 (99,9% accurate), (iii) at least 98% of the region …
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Proficiency testing (PT):
Is proficiency testing performed for this test?
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Yes
PT Provider: Help
European Molecular Genetics Quality Network, EMQN
Yes
PT Provider: Help
European Molecular Genetics Quality Network, EMQN
VUS:
Software used to interpret novel variations
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Alamut, MutationTaster
Alamut, MutationTaster
Recommended fields not provided:
Test Confirmation,
Assay limitations,
Description of internal test validation method,
Citations for Analytical validity,
Description of PT method,
Major CAP category, CAP category, CAP test list
Regulatory Approval
FDA Review:
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Category:
FDA exercises enforcement discretion
Additional Information
Clinical resources:
Molecular resources:
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Patients and consumers
with specific questions about a genetic test should contact a health care provider or a genetics professional.