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Links from GEO Profiles

Items: 20

1.
Value/Rank Plot

Ndst1 - MyD88-deficient macrophage response to lipopolysaccharide and E. coli (dye swap)

Annotation:
Ndst1, N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1
Organism:
Mus musculus
Reporter:
GPL1226, 12243 (ID_REF), GDS1706, AF074926
DataSet type:
Expression profiling by array, log2 ratio, 15 samples
ID:
18403143

GEO DataSets Gene Profile neighbors Chromosome neighbors Homologene neighbors

2.
Value/Rank Plot

Ndst1 - MyD88-deficient macrophage response to lipopolysaccharide and E. coli (dye swap)

Annotation:
Ndst1, N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1
Organism:
Mus musculus
Reporter:
GPL1226, 10970 (ID_REF), GDS1706, AK004787
DataSet type:
Expression profiling by array, log2 ratio, 15 samples
ID:
18401870

GEO DataSets Gene Profile neighbors Chromosome neighbors Homologene neighbors

3.
Value/Rank Plot

Rps14 - MyD88-deficient macrophage response to lipopolysaccharide and E. coli (dye swap)

Annotation:
Rps14, ribosomal protein S14
Organism:
Mus musculus
Reporter:
GPL1226, 13508 (ID_REF), GDS1706, NM_020600
DataSet type:
Expression profiling by array, log2 ratio, 15 samples
ID:
18404408

GEO DataSets Gene Profile neighbors Chromosome neighbors Homologene neighbors

4.
Value/Rank Plot

Synpo - MyD88-deficient macrophage response to lipopolysaccharide and E. coli (dye swap)

Annotation:
Synpo, synaptopodin
Organism:
Mus musculus
Reporter:
GPL1226, 8307 (ID_REF), GDS1706, AJ278123
DataSet type:
Expression profiling by array, log2 ratio, 15 samples
ID:
18399207

GEO DataSets Gene Profile neighbors Chromosome neighbors Homologene neighbors

5.
Value/Rank Plot

Cd74 - MyD88-deficient macrophage response to lipopolysaccharide and E. coli (dye swap)

Annotation:
Cd74, CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)
Organism:
Mus musculus
Reporter:
GPL1226, 4961 (ID_REF), GDS1706, X05430
DataSet type:
Expression profiling by array, log2 ratio, 15 samples
ID:
18395861

GEO DataSets Gene Profile neighbors Chromosome neighbors Homologene neighbors

6.
Value/Rank Plot

Tcof1 - MyD88-deficient macrophage response to lipopolysaccharide and E. coli (dye swap)

Annotation:
Tcof1, treacle ribosome biogenesis factor 1
Organism:
Mus musculus
Reporter:
GPL1226, 9395 (ID_REF), GDS1706, NM_011552
DataSet type:
Expression profiling by array, log2 ratio, 15 samples
ID:
18400295

GEO DataSets Gene Chromosome neighbors Homologene neighbors

7.
Value/Rank Plot

Tcof1 - MyD88-deficient macrophage response to lipopolysaccharide and E. coli (dye swap)

Annotation:
Tcof1, treacle ribosome biogenesis factor 1
Organism:
Mus musculus
Reporter:
GPL1226, 7818 (ID_REF), GDS1706, U81030
DataSet type:
Expression profiling by array, log2 ratio, 15 samples
ID:
18398718

GEO DataSets Gene Profile neighbors Chromosome neighbors Homologene neighbors

8.
Value/Rank Plot

Rbm22 - MyD88-deficient macrophage response to lipopolysaccharide and E. coli (dye swap)

Annotation:
Rbm22, RNA binding motif protein 22
Organism:
Mus musculus
Reporter:
GPL1226, 6349 (ID_REF), GDS1706, AK018452
DataSet type:
Expression profiling by array, log2 ratio, 15 samples
ID:
18397249

GEO DataSets Gene Profile neighbors Chromosome neighbors Homologene neighbors

9.
Value/Rank Plot

Dctn4 - MyD88-deficient macrophage response to lipopolysaccharide and E. coli (dye swap)

Annotation:
Dctn4, dynactin 4
Organism:
Mus musculus
Reporter:
GPL1226, 7739 (ID_REF), GDS1706, NM_026302
DataSet type:
Expression profiling by array, log2 ratio, 15 samples
ID:
18398639

GEO DataSets Gene Profile neighbors Chromosome neighbors Homologene neighbors

10.
Value/Rank Plot

Smim3 - MyD88-deficient macrophage response to lipopolysaccharide and E. coli (dye swap)

Annotation:
Smim3, small integral membrane protein 3
Organism:
Mus musculus
Reporter:
GPL1226, 9744 (ID_REF), GDS1706, AF313412
DataSet type:
Expression profiling by array, log2 ratio, 15 samples
ID:
18400644

GEO DataSets Gene Profile neighbors Chromosome neighbors Homologene neighbors

11.
Value/Rank Plot

Camk2a - MyD88-deficient macrophage response to lipopolysaccharide and E. coli (dye swap)

Annotation:
Camk2a, calcium/calmodulin-dependent protein kinase II alpha
Organism:
Mus musculus
Reporter:
GPL1226, 5254 (ID_REF), GDS1706, X14836
DataSet type:
Expression profiling by array, log2 ratio, 15 samples
ID:
18396154

GEO DataSets Gene Profile neighbors Chromosome neighbors Homologene neighbors

12.
Value/Rank Plot

Cdx1 - MyD88-deficient macrophage response to lipopolysaccharide and E. coli (dye swap)

Annotation:
Cdx1, caudal type homeobox 1
Organism:
Mus musculus
Reporter:
GPL1226, 7015 (ID_REF), GDS1706, M37163
DataSet type:
Expression profiling by array, log2 ratio, 15 samples
ID:
18397915

GEO DataSets Gene Chromosome neighbors Homologene neighbors

13.
Value/Rank Plot

Iigp1 - MyD88-deficient macrophage response to lipopolysaccharide and E. coli (dye swap)

Annotation:
Iigp1, interferon inducible GTPase 1
Organism:
Mus musculus
Reporter:
GPL1226, 13387 (ID_REF), GDS1706, AF194871
DataSet type:
Expression profiling by array, log2 ratio, 15 samples
ID:
18404287

GEO DataSets Gene Profile neighbors Chromosome neighbors

14.
Value/Rank Plot

Pdgfrb - MyD88-deficient macrophage response to lipopolysaccharide and E. coli (dye swap)

Annotation:
Pdgfrb, platelet derived growth factor receptor, beta polypeptide
Organism:
Mus musculus
Reporter:
GPL1226, 4940 (ID_REF), GDS1706, X04367
DataSet type:
Expression profiling by array, log2 ratio, 15 samples
ID:
18395840

GEO DataSets Gene Profile neighbors Chromosome neighbors Homologene neighbors

15.
Value/Rank Plot

Csf1r - MyD88-deficient macrophage response to lipopolysaccharide and E. coli (dye swap)

Annotation:
Csf1r, colony stimulating factor 1 receptor
Organism:
Mus musculus
Reporter:
GPL1226, 13083 (ID_REF), GDS1706, X06368
DataSet type:
Expression profiling by array, log2 ratio, 15 samples
ID:
18403983

GEO DataSets Gene Profile neighbors Chromosome neighbors Homologene neighbors

16.
Value/Rank Plot

Fbn2 - MyD88-deficient macrophage response to lipopolysaccharide and E. coli (dye swap)

Annotation:
Fbn2, fibrillin 2
Organism:
Mus musculus
Reporter:
GPL1226, 10180 (ID_REF), GDS1706, L39790
DataSet type:
Expression profiling by array, log2 ratio, 15 samples
ID:
18401080

GEO DataSets Gene Profile neighbors Chromosome neighbors Homologene neighbors

17.
Value/Rank Plot

Slc12a2 - MyD88-deficient macrophage response to lipopolysaccharide and E. coli (dye swap)

Annotation:
Slc12a2, solute carrier family 12, member 2
Organism:
Mus musculus
Reporter:
GPL1226, 12454 (ID_REF), GDS1706, U13174
DataSet type:
Expression profiling by array, log2 ratio, 15 samples
ID:
18403354

GEO DataSets Gene Profile neighbors Chromosome neighbors Homologene neighbors

18.
Value/Rank Plot

2210409D07Rik - MyD88-deficient macrophage response to lipopolysaccharide and E. coli (dye swap)

Annotation:
2210409D07Rik, RIKEN cDNA 2210409D07 gene
Organism:
Mus musculus
Reporter:
GPL1226, 12394 (ID_REF), GDS1706, AK008868
DataSet type:
Expression profiling by array, log2 ratio, 15 samples
ID:
18403294

GEO DataSets Gene Profile neighbors Chromosome neighbors

19.
Value/Rank Plot

1700011I03Rik - MyD88-deficient macrophage response to lipopolysaccharide and E. coli (dye swap)

Annotation:
1700011I03Rik, RIKEN cDNA 1700011I03 gene
Organism:
Mus musculus
Reporter:
GPL1226, 5427 (ID_REF), GDS1706, AK005868
DataSet type:
Expression profiling by array, log2 ratio, 15 samples
ID:
18396327

GEO DataSets Gene Chromosome neighbors

20.
Value/Rank Plot

Prrc1 - MyD88-deficient macrophage response to lipopolysaccharide and E. coli (dye swap)

Annotation:
Prrc1, proline-rich coiled-coil 1
Organism:
Mus musculus
Reporter:
GPL1226, 6040 (ID_REF), GDS1706, AK014139
DataSet type:
Expression profiling by array, log2 ratio, 15 samples
ID:
18396940

GEO DataSets Gene Profile neighbors Chromosome neighbors Homologene neighbors

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    Liver cirrhosis occurs as a consequence of many chronic liver diseases that are prevalent worldwide. Previous studies have shown an association between the gut microbiota and liver complications such as cirrhosis and other liver injuries. We therefore undertook a whole gut microbiome wide association study of stool samples from 98 liver cirrhosis patients and 83 healthy controls to characterise the faecal microbial communities and their functional composition. In total, we generated 860 Gb of high-quality sequence data and built a reference gene set for the liver cirrhosis cohort containing 2.69 million genes, 36.1% of which was not covered by previously published gene catalogues.
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