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GEO accession:
Sample GSM999354
Query DataSets for GSM999354
Status
Public on Sep 07, 2012
Title
HudsonAlpha_MethylArray_GM19239_Methyl450K
Sample type
genomic
Source name
GM19239
Organism
Homo sapiens
Characteristics
lab: HudsonAlpha
lab description: Myers - Hudson Alpha Institute for Biotechnology
datatype: MethylArray
datatype description: DNA Methylation Array
cell: GM19239
cell organism: human
cell description: B-lymphocyte, lymphoblastoid, International HapMap Project, Yoruba in Ibadan, Nigera, treatment: Epstein-Barr Virus transformed
cell lineage: mesoderm
cell sex: M
labversion: Methyl450K
treatment: None
treatment description: No special treatment or protocol applies
labversion: Methyl450K
obtainedby: Duke
obtainedby description: Crawford - Duke University
replicate: 1
Biomaterial provider
Coriell;
http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=GM19239
Treatment protocol
None
Extracted molecule
genomic DNA
Extraction protocol
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeHaibMethyl450
Label
Cy3 or Cy5
Label protocol
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeHaibMethyl450
Hybridization protocol
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeHaibMethyl450
Scan protocol
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeHaibMethyl450
Description
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeHaibMethyl450
Data processing
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeHaibMethyl450
Score in the bed files is beta value x 1000
Submission date
Sep 07, 2012
Last update date
Jul 11, 2013
Contact name
ENCODE DCC
E-mail(s)
encode-help@lists.stanford.edu
Organization name
ENCODE DCC
Street address
300 Pasteur Dr
City
Stanford
State/province
CA
ZIP/Postal code
94305-5120
Country
USA
Platform ID
GPL13534
Series (1)
GSE40699
CpG Methylation by Methyl 450K Bead Arrays from ENCODE/HAIB
Supplementary file
Size
Download
File type/resource
GSM999354_hg19_wgEncodeHaibMethyl450Gm19239SitesRep1_Grn.idat.gz
4.1 Mb
(ftp)
(http)
IDAT
GSM999354_hg19_wgEncodeHaibMethyl450Gm19239SitesRep1_Red.idat.gz
4.2 Mb
(ftp)
(http)
IDAT
Processed data provided as supplementary file
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