|
| Status |
Public on Oct 16, 2012 |
| Title |
GBM_11-138 |
| Sample type |
genomic |
| |
|
| Source name |
Primary brain tumor tissue
|
| Organism |
Homo sapiens |
| Characteristics |
tissue: primary glioblastoma
brain location: frontal lobe
age at diagnosis (years): 75
gender: female
h3f3a status: WT
idh1 status: WT
dna methylation subgroup: RTK II 'classic'
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
Extraction of high molecular weight DNA from frozen tumor samples was carried out by use of a salting-out method or by ultracentrifugation over cesium chloride.
|
| Label |
biotin/DNP
|
| Label protocol |
Illumina protocol.
|
| |
|
| Hybridization protocol |
Illumina protocol.
|
| Scan protocol |
Illumina iScan System according to the manufacturer's protocol.
|
| Description |
dkfz_11-138
Methylation data from a glioblastoma tumor sample.
|
| Data processing |
Data analysis has been carried out using GenomeStudio 2011.1 (methylationmodule 1.9.0) and annotation 1.2. The methylation analysis has been performed as suggested by Illumina with no background subtraction and normalization to internal controls.
|
| |
|
| Submission date |
Jul 23, 2012 |
| Last update date |
Oct 16, 2012 |
| Contact name |
Dominik Sturm |
| Organization name |
German Cancer Research Center
|
| Street address |
Im Neuenheimer Feld 280
|
| City |
Heidelberg |
| ZIP/Postal code |
69120 |
| Country |
Germany |
| |
|
| Platform ID |
GPL13534 |
| Series (1) |
| GSE36278 |
Methylation data from glioblastoma tumor samples |
|
