|
| Status |
Public on Oct 17, 2012 |
| Title |
Twin_Pair_4_affected |
| Sample type |
genomic |
| |
|
| Source name |
Whole blood
|
| Organism |
Homo sapiens |
| Characteristics |
gender: Female
tissue: Whole blood
twin pair: Pair_4
disease status: breast cancer sample
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
DNA samples from blood were extracted from thawed frozen whole blood collected in EDTA using the Nucleon Genomic DNA Extraction Kit BACC3
|
| Label |
Cy3, Cy5
|
| Label protocol |
Standard Illumina labelling protocol
|
| |
|
| Hybridization protocol |
bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
|
| Scan protocol |
Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting
|
| Description |
974347
|
| Data processing |
Genome Studio V2011.1
Average Beta, P-value, Unmethylated and methylated signal intensities
|
| |
|
| Submission date |
May 14, 2012 |
| Last update date |
Oct 17, 2012 |
| Contact name |
Manel Esteller |
| Organization name |
IDIBELL
|
| Department |
PEBC
|
| Lab |
Cancer Epigenetics
|
| Street address |
Hospital Duran i Reynals Av. Gran Via s/n km, 2.7
|
| City |
L'Hospitalet de Llobregat |
| State/province |
Barcelona |
| ZIP/Postal code |
08908 |
| Country |
Spain |
| |
|
| Platform ID |
GPL13534 |
| Series (1) |
| GSE37965 |
DNA methylation profiling in breast cancer discordant identical twins |
|
