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Sample GSM883889 Query DataSets for GSM883889
Status Public on Mar 03, 2012
Title H2030
Sample type genomic
 
Source name cell line
Organism Homo sapiens
Characteristics cell type: NSCLC
em_status: M
response: sensitive
Extracted molecule genomic DNA
Extraction protocol standard as recommended by illumina
Label Cy3
Label protocol standard as recommended by illumina
 
Hybridization protocol standard as recommended by illumina
Scan protocol standard as recommended by illumina
Description Non-small cell lung cancer cell line H2030
Data processing Preprocessed by Bioconductor lumi (v 2.5.3) package and sliding window smoothed with 250bp half-window-size.
 
Submission date Mar 01, 2012
Last update date Mar 03, 2012
Contact name David S Shames
E-mail(s) shames.david@gene.com
Phone 650-225-7559
Organization name Genentech Inc
Department Oncology Biomarker Development
Lab Shames
Street address 1 DNA Way
City South San Francisco
State/province CA
ZIP/Postal code 94080
Country USA
 
Platform ID GPL13534
Series (1)
GSE36216 DNA Methylation Profiling Defines Clinically Relevant Biological Subsets of Non-small Cell Lung Cancer

Data table header descriptions
ID_REF Illumina ID
VALUE Beta-value
RAW_VALUE raw Beta-value
METHYLATED the intensities measured by methylated probes
UNMETHYLATED the intensities measured by unmethylated probes
Detection_Pval the detection p-value of the probe

Data table
ID_REF VALUE RAW_VALUE METHYLATED UNMETHYLATED Detection_Pval
cg00000029 0.55877 0.54455 2304 1827 0
cg00000108 0.83165 0.83564 6696 1217 0
cg00000109 0.87026 0.88397 3253 327 0
cg00000165 0.8926 0.90564 4252 343 0
cg00000236 0.7367 0.74596 3004 923 0
cg00000289 0.71727 0.70857 1595 556 0
cg00000292 0.80814 0.78997 9817 2510 0
cg00000321 0.84259 0.84564 7018 1181 0
cg00000363 0.91296 0.90866 10585 964 0
cg00000622 0.014565 0.0090053 133 14536 0
cg00000658 0.81999 0.82323 6655 1329 0
cg00000714 0.092962 0.07552 1304 15863 0
cg00000721 0.9123 0.92042 6396 453 0
cg00000734 0.096158 0.069469 666 8821 0
cg00000769 0.046707 0.035292 367 9932 0
cg00000807 0.80624 0.77146 12976 3744 0
cg00000884 0.70808 0.71231 2476 900 0
cg00000905 0.15096 0.10866 581 4666 0
cg00000924 0.92838 0.92587 10654 753 0
cg00000948 0.89032 0.88353 10302 1258 0

Total number of rows: 485577

Table truncated, full table size 18506 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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