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Sample GSM883881 Query DataSets for GSM883881
Status Public on Mar 03, 2012
Title H1568
Sample type genomic
 
Source name cell line
Organism Homo sapiens
Characteristics cell type: NSCLC
em_status: E
response: sensitive
Extracted molecule genomic DNA
Extraction protocol standard as recommended by illumina
Label Cy3
Label protocol standard as recommended by illumina
 
Hybridization protocol standard as recommended by illumina
Scan protocol standard as recommended by illumina
Description Non-small cell lung cancer cell line H1568
Data processing Preprocessed by Bioconductor lumi (v 2.5.3) package and sliding window smoothed with 250bp half-window-size.
 
Submission date Mar 01, 2012
Last update date Mar 03, 2012
Contact name David S Shames
E-mail(s) shames.david@gene.com
Phone 650-225-7559
Organization name Genentech Inc
Department Oncology Biomarker Development
Lab Shames
Street address 1 DNA Way
City South San Francisco
State/province CA
ZIP/Postal code 94080
Country USA
 
Platform ID GPL13534
Series (1)
GSE36216 DNA Methylation Profiling Defines Clinically Relevant Biological Subsets of Non-small Cell Lung Cancer

Data table header descriptions
ID_REF Illumina ID
VALUE Beta-value
RAW_VALUE raw Beta-value
METHYLATED the intensities measured by methylated probes
UNMETHYLATED the intensities measured by unmethylated probes
Detection_Pval the detection p-value of the probe

Data table
ID_REF VALUE RAW_VALUE METHYLATED UNMETHYLATED Detection_Pval
cg00000029 0.13266 0.10731 493 4001 0
cg00000108 0.90611 0.91563 8367 671 0
cg00000109 0.85052 0.85683 3513 487 0
cg00000165 0.86689 0.87936 4738 550 0
cg00000236 0.84553 0.85842 4129 581 0
cg00000289 0.64752 0.62287 1313 695 0
cg00000292 0.90997 0.91682 10758 876 0
cg00000321 0.91103 0.91968 8050 603 0
cg00000363 0.89306 0.90492 8547 798 0
cg00000622 0.0167 0.015221 207 13293 0
cg00000658 0.82039 0.8445 7489 1279 0
cg00000714 0.1477 0.12562 2697 18672 0
cg00000721 0.90598 0.90952 4594 357 0
cg00000734 0.11023 0.079676 866 9903 0
cg00000769 0.063152 0.051398 544 9940 0
cg00000807 0.89171 0.89165 14056 1608 0
cg00000884 0.78056 0.78569 2702 637 0
cg00000905 0.13996 0.1192 447 3203 0
cg00000924 0.10597 0.076365 810 9697 0
cg00000948 0.82689 0.83594 10751 2010 0

Total number of rows: 485577

Table truncated, full table size 18462 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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