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Sample GSM883875 Query DataSets for GSM883875
Status Public on Mar 03, 2012
Title ABC-1
Sample type genomic
 
Source name cell line
Organism Homo sapiens
Characteristics cell type: NSCLC
em_status: E
response: resistant
Extracted molecule genomic DNA
Extraction protocol standard as recommended by illumina
Label Cy3
Label protocol standard as recommended by illumina
 
Hybridization protocol standard as recommended by illumina
Scan protocol standard as recommended by illumina
Description Non-small cell lung cancer cell line ABC-1
Data processing Preprocessed by Bioconductor lumi (v 2.5.3) package and sliding window smoothed with 250bp half-window-size.
 
Submission date Mar 01, 2012
Last update date Mar 03, 2012
Contact name David S Shames
E-mail(s) shames.david@gene.com
Phone 650-225-7559
Organization name Genentech Inc
Department Oncology Biomarker Development
Lab Shames
Street address 1 DNA Way
City South San Francisco
State/province CA
ZIP/Postal code 94080
Country USA
 
Platform ID GPL13534
Series (1)
GSE36216 DNA Methylation Profiling Defines Clinically Relevant Biological Subsets of Non-small Cell Lung Cancer

Data table header descriptions
ID_REF Illumina ID
VALUE Beta-value
RAW_VALUE raw Beta-value
METHYLATED the intensities measured by methylated probes
UNMETHYLATED the intensities measured by unmethylated probes
Detection_Pval the detection p-value of the probe

Data table
ID_REF VALUE RAW_VALUE METHYLATED UNMETHYLATED Detection_Pval
cg00000029 0.11719 0.068391 275 3646 0
cg00000108 0.91196 0.91039 7416 630 0
cg00000109 0.90698 0.90919 5577 457 0
cg00000165 0.79677 0.79467 5573 1340 0
cg00000236 0.87249 0.87179 3869 469 0
cg00000289 0.65518 0.56507 1294 896 0
cg00000292 0.88382 0.87316 9059 1216 0
cg00000321 0.83461 0.83171 6484 1212 0
cg00000363 0.68312 0.5991 8739 5748 0
cg00000622 0.027609 0.019711 292 14422 0
cg00000658 0.81909 0.80947 7367 1634 0
cg00000714 0.16681 0.12389 2707 19043 0
cg00000721 0.87714 0.87888 5348 637 0
cg00000734 0.11787 0.061983 891 13384 0
cg00000769 0.062044 0.043552 412 8948 0
cg00000807 0.87576 0.82577 13555 2760 0
cg00000884 0.81493 0.81457 5008 1040 0
cg00000905 0.19544 0.10473 589 4935 0
cg00000924 0.11627 0.059242 732 11524 0
cg00000948 0.88163 0.8685 9484 1336 0

Total number of rows: 485577

Table truncated, full table size 18506 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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