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Sample GSM883866 Query DataSets for GSM883866
Status Public on Mar 03, 2012
Title H820
Sample type genomic
 
Source name cell line
Organism Homo sapiens
Characteristics cell type: NSCLC
em_status: E
response: sensitive
Extracted molecule genomic DNA
Extraction protocol standard as recommended by illumina
Label Cy3
Label protocol standard as recommended by illumina
 
Hybridization protocol standard as recommended by illumina
Scan protocol standard as recommended by illumina
Description Non-small cell lung cancer cell line H820
Data processing Preprocessed by Bioconductor lumi (v 2.5.3) package and sliding window smoothed with 250bp half-window-size.
 
Submission date Mar 01, 2012
Last update date Mar 03, 2012
Contact name David S Shames
E-mail(s) shames.david@gene.com
Phone 650-225-7559
Organization name Genentech Inc
Department Oncology Biomarker Development
Lab Shames
Street address 1 DNA Way
City South San Francisco
State/province CA
ZIP/Postal code 94080
Country USA
 
Platform ID GPL13534
Series (1)
GSE36216 DNA Methylation Profiling Defines Clinically Relevant Biological Subsets of Non-small Cell Lung Cancer

Data table header descriptions
ID_REF Illumina ID
VALUE Beta-value
RAW_VALUE raw Beta-value
METHYLATED the intensities measured by methylated probes
UNMETHYLATED the intensities measured by unmethylated probes
Detection_Pval the detection p-value of the probe

Data table
ID_REF VALUE RAW_VALUE METHYLATED UNMETHYLATED Detection_Pval
cg00000029 0.13955 0.12966 574 3753 0
cg00000108 0.95988 0.92647 5153 309 0
cg00000109 0.89589 0.81 2656 523 0
cg00000165 0.81799 0.76104 3239 917 0
cg00000236 0.83101 0.78045 3569 904 0
cg00000289 0.56196 0.4712 1268 1323 0
cg00000292 0.89687 0.8765 7750 992 0
cg00000321 0.46592 0.44624 3665 4448 0
cg00000363 0.51047 0.48905 7702 7947 0
cg00000622 0.033429 0.042212 726 16373 0
cg00000658 0.75613 0.74599 5448 1755 0
cg00000714 0.15104 0.11781 2827 21070 0
cg00000721 0.92039 0.85887 3694 507 0
cg00000734 0.12328 0.087664 1228 12680 0
cg00000769 0.052792 0.051215 590 10830 0
cg00000807 0.8371 0.82027 12236 2581 0
cg00000884 0.73125 0.69513 3614 1485 0
cg00000905 0.1778 0.16485 590 2889 0
cg00000924 0.13689 0.098126 1267 11545 0
cg00000948 0.60123 0.58259 9047 6382 0

Total number of rows: 485577

Table truncated, full table size 18588 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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