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Sample GSM883857 Query DataSets for GSM883857
Status Public on Mar 03, 2012
Title H2122
Sample type genomic
 
Source name cell line
Organism Homo sapiens
Characteristics cell type: NSCLC
em_status: E
response: sensitive
Extracted molecule genomic DNA
Extraction protocol standard as recommended by illumina
Label Cy3
Label protocol standard as recommended by illumina
 
Hybridization protocol standard as recommended by illumina
Scan protocol standard as recommended by illumina
Description Non-small cell lung cancer cell line H2122
Data processing Preprocessed by Bioconductor lumi (v 2.5.3) package and sliding window smoothed with 250bp half-window-size.
 
Submission date Mar 01, 2012
Last update date Mar 03, 2012
Contact name David S Shames
E-mail(s) shames.david@gene.com
Phone 650-225-7559
Organization name Genentech Inc
Department Oncology Biomarker Development
Lab Shames
Street address 1 DNA Way
City South San Francisco
State/province CA
ZIP/Postal code 94080
Country USA
 
Platform ID GPL13534
Series (1)
GSE36216 DNA Methylation Profiling Defines Clinically Relevant Biological Subsets of Non-small Cell Lung Cancer

Data table header descriptions
ID_REF Illumina ID
VALUE Beta-value
RAW_VALUE raw Beta-value
METHYLATED the intensities measured by methylated probes
UNMETHYLATED the intensities measured by unmethylated probes
Detection_Pval the detection p-value of the probe

Data table
ID_REF VALUE RAW_VALUE METHYLATED UNMETHYLATED Detection_Pval
cg00000029 0.24241 0.20818 1196 4449 0
cg00000108 0.9006 0.87487 9040 1193 0
cg00000109 0.84269 0.82589 4288 804 0
cg00000165 0.71404 0.68863 3240 1365 0
cg00000236 0.86722 0.84998 6306 1013 0
cg00000289 0.65474 0.59592 1696 1050 0
cg00000292 0.87656 0.84445 9625 1673 0
cg00000321 0.79142 0.75434 9028 2840 0
cg00000363 0.29676 0.31672 5282 11295 0
cg00000622 0.028533 0.038941 662 16238 0
cg00000658 0.73899 0.72162 6032 2227 0
cg00000714 0.12331 0.13428 2920 18725 0
cg00000721 0.91528 0.90248 5386 482 0
cg00000734 0.087723 0.081609 1108 12369 0
cg00000769 0.042433 0.047968 615 12106 0
cg00000807 0.82054 0.7545 13630 4335 0
cg00000884 0.82661 0.8086 4174 888 0
cg00000905 0.099487 0.088601 855 8695 0
cg00000924 0.28002 0.30075 5098 11753 0
cg00000948 0.83572 0.78865 10851 2808 0

Total number of rows: 485577

Table truncated, full table size 18660 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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