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Sample GSM883856 Query DataSets for GSM883856
Status Public on Mar 03, 2012
Title H322T
Sample type genomic
 
Source name cell line
Organism Homo sapiens
Characteristics cell type: NSCLC
em_status: E
response: sensitive
Extracted molecule genomic DNA
Extraction protocol standard as recommended by illumina
Label Cy3
Label protocol standard as recommended by illumina
 
Hybridization protocol standard as recommended by illumina
Scan protocol standard as recommended by illumina
Description Non-small cell lung cancer cell line H322T
Data processing Preprocessed by Bioconductor lumi (v 2.5.3) package and sliding window smoothed with 250bp half-window-size.
 
Submission date Mar 01, 2012
Last update date Mar 03, 2012
Contact name David S Shames
E-mail(s) shames.david@gene.com
Phone 650-225-7559
Organization name Genentech Inc
Department Oncology Biomarker Development
Lab Shames
Street address 1 DNA Way
City South San Francisco
State/province CA
ZIP/Postal code 94080
Country USA
 
Platform ID GPL13534
Series (1)
GSE36216 DNA Methylation Profiling Defines Clinically Relevant Biological Subsets of Non-small Cell Lung Cancer

Data table header descriptions
ID_REF Illumina ID
VALUE Beta-value
RAW_VALUE raw Beta-value
METHYLATED the intensities measured by methylated probes
UNMETHYLATED the intensities measured by unmethylated probes
Detection_Pval the detection p-value of the probe

Data table
ID_REF VALUE RAW_VALUE METHYLATED UNMETHYLATED Detection_Pval
cg00000029 0.31489 0.25191 2109 6163 0
cg00000108 0.90922 0.888 8912 1024 0
cg00000109 0.86525 0.85165 5339 830 0
cg00000165 0.80927 0.79412 4810 1147 0
cg00000236 0.86916 0.85446 6517 1010 0
cg00000289 0.70327 0.66166 2687 1274 0
cg00000292 0.89464 0.87273 8620 1157 0
cg00000321 0.86039 0.84672 5629 919 0
cg00000363 0.89108 0.84995 11714 1968 0
cg00000622 0.021781 0.025516 475 18041 0
cg00000658 0.80674 0.78625 6967 1794 0
cg00000714 0.1874 0.17577 4033 18812 0
cg00000721 0.88063 0.86731 5752 780 0
cg00000734 0.1122 0.082735 1118 12295 0
cg00000769 0.049269 0.051356 589 10780 0
cg00000807 0.84953 0.77511 13521 3823 0
cg00000884 0.78212 0.76229 4015 1152 0
cg00000905 0.18517 0.14405 1882 11083 0
cg00000924 0.11146 0.083403 1299 14176 0
cg00000948 0.83586 0.79512 9636 2383 0

Total number of rows: 485577

Table truncated, full table size 18614 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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