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Sample GSM883841 Query DataSets for GSM883841
Status Public on Mar 03, 2012
Title gSAC1_UI
Sample type genomic
 
Source name cell line
Organism Homo sapiens
Characteristics cell type: Normal
em_status: NA
response: NA
Extracted molecule genomic DNA
Extraction protocol standard as recommended by illumina
Label Cy3
Label protocol standard as recommended by illumina
 
Hybridization protocol standard as recommended by illumina
Scan protocol standard as recommended by illumina
Description normal lung cell line gSAC1_UI
Data processing Preprocessed by Bioconductor lumi (v 2.5.3) package and sliding window smoothed with 250bp half-window-size.
 
Submission date Mar 01, 2012
Last update date Mar 03, 2012
Contact name David S Shames
E-mail(s) shames.david@gene.com
Phone 650-225-7559
Organization name Genentech Inc
Department Oncology Biomarker Development
Lab Shames
Street address 1 DNA Way
City South San Francisco
State/province CA
ZIP/Postal code 94080
Country USA
 
Platform ID GPL13534
Series (1)
GSE36216 DNA Methylation Profiling Defines Clinically Relevant Biological Subsets of Non-small Cell Lung Cancer

Data table header descriptions
ID_REF Illumina ID
VALUE Beta-value
RAW_VALUE raw Beta-value
METHYLATED the intensities measured by methylated probes
UNMETHYLATED the intensities measured by unmethylated probes
Detection_Pval the detection p-value of the probe

Data table
ID_REF VALUE RAW_VALUE METHYLATED UNMETHYLATED Detection_Pval
cg00000029 0.11233 0.10441 665 5604 0
cg00000108 0.93437 0.91315 7570 620 0
cg00000109 0.9044 0.83146 2738 455 0
cg00000165 0.19319 0.17899 678 3010 0
cg00000236 0.80914 0.75427 3398 1007 0
cg00000289 0.58538 0.49535 1332 1257 0
cg00000292 0.68161 0.68404 10894 4932 0
cg00000321 0.46324 0.46233 5271 6030 0
cg00000363 0.20642 0.17029 2078 10025 0
cg00000622 0.026306 0.035942 672 17925 0
cg00000658 0.7829 0.77206 6859 1925 0
cg00000714 0.20239 0.18682 4599 19918 0
cg00000721 0.91528 0.86308 3738 493 0
cg00000734 0.12964 0.10315 1545 13333 0
cg00000769 0.067323 0.062618 828 12295 0
cg00000807 0.80521 0.78829 14443 3779 0
cg00000884 0.77941 0.72326 3340 1178 0
cg00000905 0.1211 0.1173 579 4257 0
cg00000924 0.41248 0.40674 7534 10889 0
cg00000948 0.87818 0.86127 12423 1901 0

Total number of rows: 485577

Table truncated, full table size 18667 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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