|
| Status |
Public on Dec 28, 2012 |
| Title |
Subject_7 [Illumina] |
| Sample type |
genomic |
| |
|
| Source name |
Lymphoblast DNA
|
| Organism |
Homo sapiens |
| Characteristics |
subject: Subject_7
phenotype: Nicotine Dependent
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
DNA isolated using cold protein precipitation (Lahiri and Schnabel, 1993)
|
| Label |
Cy5 and Cy3
|
| Label protocol |
Illumina standard protocol
|
| |
|
| Hybridization protocol |
Illumina standard protocol
|
| Scan protocol |
Illumina standard protocol
|
| Description |
Lymphoblast isolated from whole blood
|
| Data processing |
Beta values were convereted to M-values using the Du et al.(2010) conversion then z-transformed (normalized data)
|
| |
|
| Submission date |
Dec 29, 2011 |
| Last update date |
Dec 28, 2012 |
| Contact name |
Jeffrey Plume |
| E-mail(s) |
jeffrey-plume@uiowa.edu
|
| Organization name |
University of Iowa
|
| Department |
Psychiatry
|
| Lab |
Philibert
|
| Street address |
500 Newton Rd.
|
| City |
Iowa City |
| State/province |
IA |
| ZIP/Postal code |
52246 |
| Country |
USA |
| |
|
| Platform ID |
GPL13534 |
| Series (2) |
| GSE34777 |
DNA methylation data from human lymphoblasts [Illumina] |
| GSE34779 |
A cross platform genome wide comparison of the relationship of promoter DNA methylation to gene expression |
|
